plant-dnamamba-2mer-open_chromatin / configuration_mamba.py
lgq12697
update model
cf8c303
# coding=utf-8
# Copyright 2024 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
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# See the License for the specific language governing permissions and
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"""MAMBA configuration"""
import math
from transformers.configuration_utils import PretrainedConfig
from transformers.utils import logging
logger = logging.get_logger(__name__)
class MambaConfig(PretrainedConfig):
"""
This is the configuration class to store the configuration of a [`MambaModel`]. It is used to instantiate a MAMBA
model according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the MAMBA
[state-spaces/mamba-2.8b](https://huggingface.co/state-spaces/mamba-2.8b) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 50280):
Vocabulary size of the MAMBA model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`MambaModel`].
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the embeddings and hidden states.
state_size (`int`, *optional*, defaults to 16): shape of the state space latents.
num_hidden_layers (`int`, *optional*, defaults to 32):
Number of hidden layers in the model.
layer_norm_epsilon (`float`, *optional*, defaults to 1e-05):
The epsilon to use in the layer normalization layers.
pad_token_id (`int`, *optional*, defaults to 0):
Padding token id.
bos_token_id (`int`, *optional*, defaults to 0):
The id of the beginning of sentence token in the vocabulary.
eos_token_id (`int`, *optional*, defaults to 0):
The id of the end of sentence token in the vocabulary.
expand (`int`, *optional*, defaults to 2): Expanding factor used to determine the intermediate size.
conv_kernel (`int`, *optional*, defaults to 4): Size of the convolution kernel.
use_bias (`bool`, *optional*, defaults to `False`):
Whether or not to use bias in ["in_proj", "out_proj"] of the mixer block
use_conv_bias (`bool`, *optional*, defaults to `True`):
Whether or not to use bias in the convolution layer of the mixer block.
hidden_act (`str`, *optional*, defaults to `"silu"`):
The non-linear activation function (function or string) in the decoder.
initializer_range (`float`, *optional*, defaults to 0.1):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
residual_in_fp32 (`bool`, *optional*, defaults to `True`):
Whether or not residuals should be in `float32`. If set to `False` residuals will keep the same `dtype` as the rest of the model
time_step_rank (`Union[int,str]`, *optional*, defaults to `"auto"`):
Rank of the discretization projection matrix. `"auto"` means that it will default to `math.ceil(self.hidden_size / 16)`
time_step_scale (`float`, *optional*, defaults to 1.0):
Scale used used to scale `dt_proj.bias`.
time_step_min (`float`, *optional*, defaults to 0.001):
Minimum `time_step` used to bound `dt_proj.bias`.
time_step_max (`float`, *optional*, defaults to 0.1):
Maximum `time_step` used to bound `dt_proj.bias`.
time_step_init_scheme (`float`, *optional*, defaults to `"random"`):
Init scheme used for `dt_proj.weight`. Should be one of `["random","uniform"]`
time_step_floor (`float`, *optional*, defaults to 0.0001):
Minimum clamping value of the `dt_proj.bias` layer initialization.
rescale_prenorm_residual (`bool`, *optional*, defaults to `False`):
Whether or not to rescale `out_proj` weights when initializing.
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the cache should be used.
use_mambapy (`bool`, *optional*, defaults to `False`):
Determines the fallback strategy during training if the CUDA-based official implementation of Mamba is not avaiable. If `True`, the mamba.py implementation is used. If `False`, the naive and slower implementation is used. Consider switching to the naive version if memory is limited.
Example:
```python
>>> from transformers import MambaConfig, MambaModel
>>> # Initializing a Mamba configuration
>>> configuration = MambaConfig()
>>> # Initializing a model (with random weights) from the configuration
>>> model = MambaModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "mamba"
def __init__(
self,
vocab_size=50280,
hidden_size=768,
state_size=16,
num_hidden_layers=32,
layer_norm_epsilon=1e-5,
pad_token_id=0,
bos_token_id=0,
eos_token_id=0,
expand=2,
conv_kernel=4,
use_bias=False,
use_conv_bias=True,
hidden_act="silu",
initializer_range=0.1,
residual_in_fp32=True,
time_step_rank="auto",
time_step_scale=1.0,
time_step_min=0.001,
time_step_max=0.1,
time_step_init_scheme="random",
time_step_floor=1e-4,
rescale_prenorm_residual=False,
use_cache=True,
use_mambapy=False,
**kwargs,
):
self.vocab_size = vocab_size
self.hidden_size = hidden_size
self.state_size = state_size
self.num_hidden_layers = num_hidden_layers
self.layer_norm_epsilon = layer_norm_epsilon
self.conv_kernel = conv_kernel
self.expand = expand
self.intermediate_size = int(expand * self.hidden_size)
self.bos_token_id = bos_token_id
self.eos_token_id = eos_token_id
self.pad_token_id = pad_token_id
self.use_bias = use_bias
self.use_conv_bias = use_conv_bias
self.hidden_act = hidden_act
self.initializer_range = initializer_range
self.time_step_rank = math.ceil(self.hidden_size / 16) if time_step_rank == "auto" else time_step_rank
self.time_step_scale = time_step_scale
self.time_step_min = time_step_min
self.time_step_max = time_step_max
self.time_step_init_scheme = time_step_init_scheme
self.time_step_floor = time_step_floor
self.rescale_prenorm_residual = rescale_prenorm_residual
self.residual_in_fp32 = residual_in_fp32
self.use_cache = use_cache
self.use_mambapy = use_mambapy
super().__init__(bos_token_id=bos_token_id, eos_token_id=eos_token_id, pad_token_id=pad_token_id, **kwargs)