zaccharieramzi
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added model card and model weights
Browse files- README.md +74 -0
- model_weights.h5 +3 -0
README.md
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# CascadeNet-fastmri
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---
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tags:
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- TensorFlow
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- MRI reconstruction
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- MRI
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datasets:
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- fastMRI
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---
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This model can be used to reconstruct single coil fastMRI data with an acceleration factor of 4.
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## Model description
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For more details, see https://www.mdpi.com/2076-3417/10/5/1816.
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This section is WIP.
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## Intended uses and limitations
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This model can be used to reconstruct single coil knee data from Siemens scanner at acceleration factor 4.
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It cannot be used on multi-coil data.
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## How to use
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This model can be loaded using the following repo: https://github.com/zaccharieramzi/fastmri-reproducible-benchmark.
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After cloning the repo, `git clone https://github.com/zaccharieramzi/fastmri-reproducible-benchmark`, you can install the package via `pip install fastmri-reproducible-benchmark`.
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The framework is TensorFlow.
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You can initialize and load the model weights as follows:
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```python
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from fastmri_recon.models.functional_models.cascading import cascade_net
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model = cascade_net()
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model.load_weights('model_weights.h5')
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```
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Using the model is then as simple as:
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```python
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model([
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kspace, # shape: [n_slices, n_rows, n_cols, 1]
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mask, # shape: [n_slices, n_rows, n_cols]
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])
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```
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## Limitations and bias
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The limitations and bias of this model have not been properly investigated.
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## Training data
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This model was trained using the [fastMRI dataset](https://fastmri.org/dataset/).
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## Training procedure
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The training procedure is described in https://www.mdpi.com/2076-3417/10/5/1816 for brain data.
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This section is WIP.
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## Evaluation results
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This model was evaluated using the [fastMRI dataset](https://fastmri.org/dataset/).
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| Contrast | PD | PDFS |
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|----------|-------|--------|
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| PSNR | 33.98 | 29.88 |
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| SSIM | 0.811 | 0.6251 |
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## Bibtex entry
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```
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@article{ramzi2020benchmarking,
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title={Benchmarking MRI reconstruction neural networks on large public datasets},
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author={Ramzi, Zaccharie and Ciuciu, Philippe and Starck, Jean-Luc},
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journal={Applied Sciences},
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volume={10},
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number={5},
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pages={1816},
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year={2020},
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publisher={Multidisciplinary Digital Publishing Institute}
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}
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```
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model_weights.h5
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version https://git-lfs.github.com/spec/v1
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oid sha256:6aefd4fbdf18640f33f2d4cde3eab6026d44e3ced14f8f852d84e12a539edbfa
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size 1831264
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