ProtT3_model / stage2.sh
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#!/bin/bash
# 执行 stage2.py 训练脚本
export WANDB_BASE_URL=https://api.bandw.top
python stage2.py \
--devices '0,1,2,3,4,5,6,7' \
--mode 'train' \
--filename 'stage2_continue_ablation_gb1.0' \
--num_query_token 8 \
--save_every_n_epochs 1 \
--max_epochs 3 \
--batch_size 32 \
--precision 'bf16-mixed' \
--num_workers 8 \
--plm_model /nas/shared/kilab/wangyujia/ProtT3/plm_model/esm2-150m \
--bert_name /nas/shared/kilab/wangyujia/ProtT3/plm_model/microsoft \
--llm_name /oss/wangyujia/BIO/construction_finetuning/alpaca/v1-20250609-141541/checkpoint-50-merged \
--llm_tune mid_lora \
--init_checkpoint /nas/shared/kilab/wangyujia/ProtT3/all_checkpoints/stage2_07070513_2datasets_construct/epoch=09.ckpt/converted.ckpt \
--use_wandb_logger \
--caption_eval_epoch 3 \
--dataset gb1