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library(Seurat)
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DimPlot(rAAV_RV.inte,)
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table(rAAV_RV.inte$sample)
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FeaturePlot(rAAV_RV.inte,
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reduction = 'tsne',
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c('rAAV_infected','RV_infected','Syt6','Tshz2'),
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ncol = 2,
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cols=c("lightgrey", "red"),
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min.cutoff='q1')
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Idents(rAAV_RV.inte) <- rAAV_RV.inte$sample
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DimPlot(rAAV_RV.inte, reduction = "tsne", group.by = "sample",
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cols = c("#00bfc4", "lightgrey","red", "grey"), pt.size = 0.5) +
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ggtitle("t-SNE Visualization of Infected Cells")
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Idents(rAAV_RV.inte) <- rAAV_RV.inte$Maintype
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DimPlot(rAAV_RV.inte, reduction = "umap", pt.size = 0.5) +
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ggtitle("t-SNE Visualization of Infected Cells")
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table(rAAV_RV.inte$Maintype,rAAV_RV.inte$sample)
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