bimamba-template / modeling_bimamba.py
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"""BiMamba model for Hugging Face.
"""
import math
from functools import partial
from typing import Optional, Tuple, Union
import torch
from mamba_ssm.modules.mamba_simple import Mamba, Block
from torch import nn
from torch.nn import functional as F
from transformers import PreTrainedModel
from transformers.modeling_outputs import BaseModelOutputWithNoAttention, MaskedLMOutput
try:
from mamba_ssm.ops.triton.layernorm import RMSNorm, layer_norm_fn, rms_norm_fn
except ImportError:
RMSNorm, layer_norm_fn, rms_norm_fn = None, None, None
from .configuration_bimamba import BiMambaConfig
def create_block(
d_model,
ssm_cfg=None,
norm_epsilon=1e-5,
rms_norm=False,
residual_in_fp32=False,
fused_add_norm=False,
layer_idx=None,
bidirectional=True,
bidirectional_strategy="add",
bidirectional_weight_tie=True,
device=None,
dtype=None,
):
"""Create BiMamba block.
Adapted from: https://github.com/state-spaces/mamba/blob/main/mamba_ssm/models/mixer_seq_simple.py
"""
if ssm_cfg is None:
ssm_cfg = {}
factory_kwargs = {"device": device, "dtype": dtype}
bidirectional_kwargs = {
"bidirectional": bidirectional,
"bidirectional_strategy": bidirectional_strategy,
"bidirectional_weight_tie": bidirectional_weight_tie,
}
mixer_cls = partial(BiMambaWrapper, layer_idx=layer_idx, **ssm_cfg, **bidirectional_kwargs, **factory_kwargs)
norm_cls = partial(
nn.LayerNorm if not rms_norm else RMSNorm, eps=norm_epsilon, **factory_kwargs
)
block_cls = Block
block = block_cls(
d_model,
mixer_cls,
norm_cls=norm_cls,
fused_add_norm=fused_add_norm,
residual_in_fp32=residual_in_fp32,
)
block.layer_idx = layer_idx
return block
class BiMambaWrapper(nn.Module):
"""Thin wrapper around Mamba to support bi-directionality."""
def __init__(
self,
d_model: int,
bidirectional: bool = True,
bidirectional_strategy: Optional[str] = "add",
bidirectional_weight_tie: bool = True,
**mamba_kwargs,
):
super().__init__()
if bidirectional and bidirectional_strategy is None:
bidirectional_strategy = "add" # Default strategy: `add`
if bidirectional and bidirectional_strategy not in ["add", "ew_multiply"]:
raise NotImplementedError(f"`{bidirectional_strategy}` strategy for bi-directionality is not implemented!")
self.bidirectional = bidirectional
self.bidirectional_strategy = bidirectional_strategy
self.mamba_fwd = Mamba(
d_model=d_model,
**mamba_kwargs
)
if bidirectional:
self.mamba_rev = Mamba(
d_model=d_model,
**mamba_kwargs
)
if bidirectional_weight_tie: # Tie in and out projections (where most of param count lies)
self.mamba_rev.in_proj.weight = self.mamba_fwd.in_proj.weight
self.mamba_rev.in_proj.bias = self.mamba_fwd.in_proj.bias
self.mamba_rev.out_proj.weight = self.mamba_fwd.out_proj.weight
self.mamba_rev.out_proj.bias = self.mamba_fwd.out_proj.bias
else:
self.mamba_rev = None
def forward(self, hidden_states, inference_params=None):
"""Bidirectional-enabled forward pass
hidden_states: (B, L, D)
Returns: same shape as hidden_states
"""
out = self.mamba_fwd(hidden_states, inference_params=inference_params)
if self.bidirectional:
out_rev = self.mamba_rev(
hidden_states.flip(dims=(1,)), # Flip along the sequence length dimension
inference_params=inference_params
).flip(dims=(1,)) # Flip back for combining with forward hidden states
if self.bidirectional_strategy == "add":
out = out + out_rev
elif self.bidirectional_strategy == "ew_multiply":
out = out * out_rev
else:
raise NotImplementedError(f"`{self.bidirectional_strategy}` for bi-directionality not implemented!")
return out
class BiMambaEmbeddings(nn.Module):
def __init__(
self,
config: BiMambaConfig,
device=None,
dtype=None,
):
super().__init__()
factory_kwargs = {"device": device, "dtype": dtype}
self.word_embeddings = nn.Embedding(config.vocab_size, config.d_model, **factory_kwargs)
def forward(self, input_ids):
"""
input_ids: (batch, seqlen)
"""
return self.word_embeddings(input_ids)
class BiMambaMixerModel(nn.Module):
def __init__(
self,
config: BiMambaConfig,
device=None,
dtype=None,
) -> None:
super().__init__()
factory_kwargs = {"device": device, "dtype": dtype}
self.fused_add_norm = config.fused_add_norm
self.residual_in_fp32 = config.residual_in_fp32
self.embeddings = BiMambaEmbeddings(config, **factory_kwargs)
# Mamba changes the order of residual and layer norm:
# Instead of LN -> Attn / MLP -> Add, we do:
# Add -> LN -> Attn / MLP / Mixer, returning both the residual branch (output of Add) and
# the main branch (output of MLP / Mixer). The model definition is unchanged.
# This is for performance reason: we can fuse add + layer_norm.
if config.fused_add_norm:
if layer_norm_fn is None or rms_norm_fn is None:
raise ImportError("Failed to import Triton LayerNorm / RMSNorm kernels")
self.layers = nn.ModuleList(
[
create_block(
config.d_model,
ssm_cfg=config.ssm_cfg,
norm_epsilon=config.norm_epsilon,
rms_norm=config.rms_norm,
residual_in_fp32=config.residual_in_fp32,
fused_add_norm=config.fused_add_norm,
layer_idx=i,
bidirectional=config.bidirectional,
bidirectional_strategy=config.bidirectional_strategy,
bidirectional_weight_tie=config.bidirectional_weight_tie,
**factory_kwargs,
)
for i in range(config.n_layer)
]
)
norm_f = (nn.LayerNorm if not config.rms_norm else RMSNorm)(
config.d_model, eps=config.norm_epsilon, **factory_kwargs
)
self.norm_f = norm_f
def forward(self, input_ids, inputs_embeds=None, output_hidden_states=False):
"""Mixer forward."""
all_hidden_states = []
if inputs_embeds is not None:
hidden_states = inputs_embeds
else:
hidden_states = self.embeddings(input_ids)
residual = None
for layer in self.layers:
if output_hidden_states:
all_hidden_states.append(hidden_states)
# TODO: Add support for gradient checkpointing
hidden_states, residual = layer(
hidden_states, residual, inference_params=None
)
if not self.fused_add_norm:
residual = (hidden_states + residual) if residual is not None else hidden_states
hidden_states = self.norm_f(residual.to(dtype=self.norm_f.weight.dtype))
else:
fused_add_norm_fn = rms_norm_fn if isinstance(self.norm_f, RMSNorm) else layer_norm_fn
# Set prenorm=False here since we don't need the residual
hidden_states = fused_add_norm_fn(
hidden_states,
self.norm_f.weight,
self.norm_f.bias,
eps=self.norm_f.eps,
residual=residual,
prenorm=False,
residual_in_fp32=self.residual_in_fp32,
)
if output_hidden_states:
all_hidden_states.append(hidden_states)
return hidden_states, all_hidden_states
def cross_entropy(logits, y, ignore_index=-100):
"""Cross entropy loss."""
logits = logits.view(-1, logits.shape[-1])
y = y.view(-1)
return F.cross_entropy(logits, y, ignore_index=ignore_index)
def weighted_cross_entropy(logits, y, loss_weights, ignore_index=-100):
"""Weighted cross entropy loss (discounts certain tokens)."""
logits = logits.view(-1, logits.shape[-1])
y = y.view(-1)
ce = F.cross_entropy(logits, y, ignore_index=ignore_index, reduction="none")
loss_weights = loss_weights.view(-1)
loss_weights[y == ignore_index] = 0.0
# TODO: Follows GPN implementation, but should we remove weight normalization?
return (ce * (loss_weights / loss_weights.sum())).sum()
class BiMambaPreTrainedModel(PreTrainedModel):
"""PreTrainedModel wrapper for BiMamba backbone."""
config_class = BiMambaConfig
base_model_prefix = "bimamba"
supports_gradient_checkpointing = False
_no_split_modules = ["BiMambaWrapper"]
def _init_weights(
self,
module,
initializer_range=0.02, # Now only used for embedding layer.
**kwargs,
):
"""Adapted from: https://github.com/state-spaces/mamba/blob/main/mamba_ssm/models/mixer_seq_simple.py"""
n_layer = self.config.n_layer
initialized_cfg = self.config.initializer_cfg if self.config.initializer_cfg is not None else {}
rescale_prenorm_residual = initialized_cfg.get("rescale_prenorm_residual", True)
initializer_range = initialized_cfg.get("initializer_range", initializer_range)
n_residuals_per_layer = initialized_cfg.get("n_residuals_per_layer", 1)
if isinstance(module, nn.Linear):
if module.bias is not None:
if not getattr(module.bias, "_no_reinit", False):
nn.init.zeros_(module.bias)
elif isinstance(module, nn.Embedding):
nn.init.normal_(module.weight, std=initializer_range)
if rescale_prenorm_residual:
# Reinitialize selected weights subject to the OpenAI GPT-2 Paper Scheme:
# > A modified initialization which accounts for the accumulation on the residual path with model depth.
# > Scale the weights of residual layers at initialization by a factor of 1/√N where N is the # of
# residual layers.
# > -- GPT-2 :: https://openai.com/blog/better-language-models/
#
# Reference (Megatron-LM): https://github.com/NVIDIA/Megatron-LM/blob/main/megatron/model/gpt_model.py
for name, p in module.named_parameters():
if name in ["out_proj.weight", "fc2.weight"]:
# Special Scaled Initialization --> There are 2 Layer Norms per Transformer Block
# Following Pytorch init, except scale by 1/sqrt(2 * n_layer)
# We need to reinit p since this code could be called multiple times
# Having just p *= scale would repeatedly scale it down
nn.init.kaiming_uniform_(p, a=math.sqrt(5))
with torch.no_grad():
p /= math.sqrt(n_residuals_per_layer * n_layer)
class BiMamba(BiMambaPreTrainedModel):
"""BiMamba model that can be instantiated using HF patterns."""
def __init__(self, config: BiMambaConfig, device=None, dtype=None, **kwargs):
super().__init__(config)
# Adjust vocab size if vocab padding is set.
if config.vocab_size % config.pad_vocab_size_multiple != 0:
config.vocab_size += config.pad_vocab_size_multiple - (config.vocab_size % config.pad_vocab_size_multiple)
self.config = config
factory_kwargs = {"device": device, "dtype": dtype}
self.backbone = BiMambaMixerModel(config, **factory_kwargs, **kwargs)
def forward(
self,
input_ids: torch.LongTensor = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[torch.Tensor, Tuple, BaseModelOutputWithNoAttention]:
"""HF-compatible forward method."""
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
hidden_states, all_hidden_states = self.backbone(
input_ids,
inputs_embeds=inputs_embeds,
output_hidden_states=output_hidden_states
)
if return_dict:
return BaseModelOutputWithNoAttention(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states if output_hidden_states else None
)
elif output_hidden_states:
return hidden_states, all_hidden_states
else:
return hidden_states
class BiMambaForMaskedLM(BiMambaPreTrainedModel):
"""HF-compatible BiMamba model for masked language modeling."""
def __init__(self, config: BiMambaConfig, device=None, dtype=None, **kwargs):
super().__init__(config, **kwargs)
factory_kwargs = {"device": device, "dtype": dtype}
self.bimamba = BiMamba(config, **factory_kwargs, **kwargs)
self.lm_head = nn.Linear(
config.d_model,
self.config.vocab_size, # Use BiMamba config as it might have been updated
bias=False,
**factory_kwargs
)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.bimamba.backbone.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.bimamba.backbone.embeddings.word_embeddings = value
def get_output_embeddings(self):
return self.lm_head
def set_output_embeddings(self, new_embeddings):
"""Overrides output embeddings."""
self.lm_head = new_embeddings
def tie_weights(self):
"""Tie weights."""
super().tie_weights()
def get_decoder(self):
"""Get decoder (backbone) for the model."""
return self.bimamba
def set_decoder(self, decoder):
"""Set decoder (backbone) for the model."""
self.bimamba = decoder
def forward(
self,
input_ids: torch.LongTensor = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
loss_weights: Optional[torch.FloatTensor] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, MaskedLMOutput]:
"""HF-compatible forward method."""
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# decoder outputs consists of (dec_features, layer_state, dec_hidden, dec_attn)
outputs = self.bimamba(
input_ids=input_ids,
inputs_embeds=inputs_embeds,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0]
logits = self.lm_head(hidden_states)
logits = logits.float()
loss = None
if labels is not None:
if loss_weights is not None:
loss = weighted_cross_entropy(logits, labels, loss_weights, ignore_index=self.config.pad_token_id)
else:
loss = cross_entropy(logits, labels, ignore_index=self.config.pad_token_id)
if not return_dict:
output = (logits,) + outputs[1:]
return (loss,) + output if loss is not None else output
return MaskedLMOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
)