add default KEGG names file.

bugfix, output copy number to shap output csv.

Use xgboost by default.

17_apply_to_proteome.py: Add shap output

17_apply_to_proteome.py: Do not croak when only annotations are being generated.

Update README.md

README: Update as per Rizky's suggestions.

README: Update it.

README: Update it.

README: Update, add LICENSE.

Add further important files.

Update README.md

Upload XGBoost.model

initial commit