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- .DS_Store +0 -0
- .gitattributes +23 -0
- README.md +1 -0
- data/.DS_Store +0 -0
- data/processed/.DS_Store +0 -0
- data/processed/scPerturb/.DS_Store +0 -0
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- data/processed/scPerturb/dataset_summary.csv +5 -0
- data/processed/scPerturb/latent_space/.mplconfig/fontlist-v390.json +0 -0
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README.md
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# final_thesis
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dataset_name,n_cells,n_single_perturbation,n_control,perturbation_type,cell_line,source_perturbation_col,source_gene_col,source_guide_col,expression_location,single_perturbation_ratio
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AdamsonWeissman2016_GSM2406675_10X001,5768,6,16,['CRISPR'],['K562'],perturbation,perturbation,,X only,0.0010402219140083217
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AdamsonWeissman2016_GSM2406677_10X005,15006,13,3674,['CRISPR'],['K562'],perturbation,perturbation,,X only,0.0008663201386112222
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AdamsonWeissman2016_GSM2406681_10X010,65337,101,2714,['CRISPR'],['K562'],perturbation,perturbation,,X only,0.0015458316114911918
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ReplogleWeissman2022_K562_essential,310385,299694,10816,['CRISPR'],['K562'],perturbation,gene,guide_id,X only,0.9655556808479792
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data/processed/scPerturb/latent_space/.numba_cache/pynndescent_2f78d67805409237cefeb1ec14ccc6aeb064e9fd/rp_trees.search_flat_bit_tree-2744.py313.1.nbc
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data/processed/scPerturb/latent_space/.numba_cache/pynndescent_2f78d67805409237cefeb1ec14ccc6aeb064e9fd/rp_trees.search_flat_bit_tree-2744.py313.2.nbc
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data/processed/scPerturb/latent_space/.numba_cache/pynndescent_2f78d67805409237cefeb1ec14ccc6aeb064e9fd/rp_trees.search_flat_bit_tree-2744.py313.nbi
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data/processed/scPerturb/latent_space/.numba_cache/pynndescent_2f78d67805409237cefeb1ec14ccc6aeb064e9fd/rp_trees.search_flat_tree-2717.py313.1.nbc
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data/processed/scPerturb/latent_space/.numba_cache/pynndescent_2f78d67805409237cefeb1ec14ccc6aeb064e9fd/rp_trees.search_flat_tree-2717.py313.2.nbc
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data/processed/scPerturb/latent_space/.numba_cache/pynndescent_2f78d67805409237cefeb1ec14ccc6aeb064e9fd/rp_trees.search_flat_tree-2717.py313.nbi
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data/processed/scPerturb/latent_space/.numba_cache/pynndescent_2f78d67805409237cefeb1ec14ccc6aeb064e9fd/rp_trees.select_side-2644.py313.1.nbc
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data/processed/scPerturb/latent_space/.numba_cache/pynndescent_2f78d67805409237cefeb1ec14ccc6aeb064e9fd/rp_trees.select_side-2644.py313.2.nbc
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data/processed/scPerturb/latent_space/.numba_cache/pynndescent_2f78d67805409237cefeb1ec14ccc6aeb064e9fd/rp_trees.select_side-2644.py313.nbi
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data/processed/scPerturb/latent_space/.numba_cache/pynndescent_2f78d67805409237cefeb1ec14ccc6aeb064e9fd/rp_trees.select_side_bit-2680.py313.1.nbc
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data/processed/scPerturb/latent_space/.numba_cache/pynndescent_2f78d67805409237cefeb1ec14ccc6aeb064e9fd/rp_trees.select_side_bit-2680.py313.2.nbc
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data/processed/scPerturb/latent_space/.numba_cache/pynndescent_2f78d67805409237cefeb1ec14ccc6aeb064e9fd/rp_trees.select_side_bit-2680.py313.nbi
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data/processed/scPerturb/latent_space/.numba_cache/pynndescent_2f78d67805409237cefeb1ec14ccc6aeb064e9fd/sparse.sparse_diff-199.py313.1.nbc
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data/processed/scPerturb/latent_space/.numba_cache/pynndescent_2f78d67805409237cefeb1ec14ccc6aeb064e9fd/sparse.sparse_diff-199.py313.2.nbc
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data/processed/scPerturb/latent_space/.numba_cache/pynndescent_2f78d67805409237cefeb1ec14ccc6aeb064e9fd/sparse.sparse_dot_product-256.py313.1.nbc
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data/processed/scPerturb/latent_space/.numba_cache/pynndescent_2f78d67805409237cefeb1ec14ccc6aeb064e9fd/utils.apply_graph_update_array-661.py313.1.nbc
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data/processed/scPerturb/latent_space/.numba_cache/pynndescent_2f78d67805409237cefeb1ec14ccc6aeb064e9fd/utils.check_and_mark_visited-338.py313.1.nbc
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data/processed/scPerturb/latent_space/.numba_cache/pynndescent_2f78d67805409237cefeb1ec14ccc6aeb064e9fd/utils.checked_flagged_heap_push-471.py313.1.nbc
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