aletlvl commited on
Commit
e23f6f2
·
verified ·
1 Parent(s): d7761ce

Tokenization fixed

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Files changed (1) hide show
  1. tokenization_nicheformer.py +4 -0
tokenization_nicheformer.py CHANGED
@@ -290,6 +290,10 @@ class NicheformerTokenizer(PreTrainedTokenizer):
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  adata = ad.concat([reference_model, adata], join='outer', axis=0)
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  adata = adata[1:]
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  # Get gene expression data
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  X = adata.X
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  adata = ad.concat([reference_model, adata], join='outer', axis=0)
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  adata = adata[1:]
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+ print("AFTER CONCATENATION")
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+ print(f"modality dtype: {adata.obs['modality'].dtype}")
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+ print(f"specie dtype: {adata.obs['specie'].dtype}")
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+ print(f"assay dtype: {adata.obs['assay'].dtype}")
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  # Get gene expression data
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  X = adata.X
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