Hugging Face's logo

tanoManzo
/
DNABERT-2-117M_ft_Hepg2_1kbpHG19_DHSs_H3K27AC

Text Classification
Transformers
Safetensors
bert
Generated from Trainer
custom_code
Inference Endpoints
Model card Files Community
tanoManzo commited on
Commit
e78a1e8
•
1 Parent(s): 7cbe996

Training in progress, step 500

Browse files
Files changed (6) hide show
  1. config.json +34 -0
  2. model.safetensors +3 -0
  3. special_tokens_map.json +37 -0
  4. tokenizer.json +0 -0
  5. tokenizer_config.json +52 -0
  6. training_args.bin +3 -0
config.json ADDED
@@ -0,0 +1,34 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "_name_or_path": "zhihan1996/DNABERT-2-117M",
3
+ "alibi_starting_size": 512,
4
+ "architectures": [
5
+ "BertForSequenceClassification"
6
+ ],
7
+ "attention_probs_dropout_prob": 0.0,
8
+ "auto_map": {
9
+ "AutoConfig": "zhihan1996/DNABERT-2-117M--configuration_bert.BertConfig",
10
+ "AutoModel": "zhihan1996/DNABERT-2-117M--bert_layers.BertModel",
11
+ "AutoModelForMaskedLM": "zhihan1996/DNABERT-2-117M--bert_layers.BertForMaskedLM",
12
+ "AutoModelForSequenceClassification": "zhihan1996/DNABERT-2-117M--bert_layers.BertForSequenceClassification"
13
+ },
14
+ "classifier_dropout": null,
15
+ "gradient_checkpointing": false,
16
+ "hidden_act": "gelu",
17
+ "hidden_dropout_prob": 0.1,
18
+ "hidden_size": 768,
19
+ "initializer_range": 0.02,
20
+ "intermediate_size": 3072,
21
+ "layer_norm_eps": 1e-12,
22
+ "max_position_embeddings": 512,
23
+ "model_type": "bert",
24
+ "num_attention_heads": 12,
25
+ "num_hidden_layers": 12,
26
+ "pad_token_id": 0,
27
+ "position_embedding_type": "absolute",
28
+ "problem_type": "single_label_classification",
29
+ "torch_dtype": "float32",
30
+ "transformers_version": "4.42.0.dev0",
31
+ "type_vocab_size": 2,
32
+ "use_cache": true,
33
+ "vocab_size": 4096
34
+ }
model.safetensors ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:31015eb704b53d0e97363e043550a453eb2db4e54658aa1723a09b9347bdbbd7
3
+ size 356777880
special_tokens_map.json ADDED
@@ -0,0 +1,37 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "cls_token": {
3
+ "content": "[CLS]",
4
+ "lstrip": false,
5
+ "normalized": false,
6
+ "rstrip": false,
7
+ "single_word": false
8
+ },
9
+ "mask_token": {
10
+ "content": "[MASK]",
11
+ "lstrip": false,
12
+ "normalized": false,
13
+ "rstrip": false,
14
+ "single_word": false
15
+ },
16
+ "pad_token": {
17
+ "content": "[PAD]",
18
+ "lstrip": false,
19
+ "normalized": false,
20
+ "rstrip": false,
21
+ "single_word": false
22
+ },
23
+ "sep_token": {
24
+ "content": "[SEP]",
25
+ "lstrip": false,
26
+ "normalized": false,
27
+ "rstrip": false,
28
+ "single_word": false
29
+ },
30
+ "unk_token": {
31
+ "content": "[UNK]",
32
+ "lstrip": false,
33
+ "normalized": false,
34
+ "rstrip": false,
35
+ "single_word": false
36
+ }
37
+ }
tokenizer.json ADDED
The diff for this file is too large to render. See raw diff
 
tokenizer_config.json ADDED
@@ -0,0 +1,52 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "added_tokens_decoder": {
3
+ "0": {
4
+ "content": "[UNK]",
5
+ "lstrip": false,
6
+ "normalized": false,
7
+ "rstrip": false,
8
+ "single_word": false,
9
+ "special": true
10
+ },
11
+ "1": {
12
+ "content": "[CLS]",
13
+ "lstrip": false,
14
+ "normalized": false,
15
+ "rstrip": false,
16
+ "single_word": false,
17
+ "special": true
18
+ },
19
+ "2": {
20
+ "content": "[SEP]",
21
+ "lstrip": false,
22
+ "normalized": false,
23
+ "rstrip": false,
24
+ "single_word": false,
25
+ "special": true
26
+ },
27
+ "3": {
28
+ "content": "[PAD]",
29
+ "lstrip": false,
30
+ "normalized": false,
31
+ "rstrip": false,
32
+ "single_word": false,
33
+ "special": true
34
+ },
35
+ "4": {
36
+ "content": "[MASK]",
37
+ "lstrip": false,
38
+ "normalized": false,
39
+ "rstrip": false,
40
+ "single_word": false,
41
+ "special": true
42
+ }
43
+ },
44
+ "clean_up_tokenization_spaces": true,
45
+ "cls_token": "[CLS]",
46
+ "mask_token": "[MASK]",
47
+ "model_max_length": 1000000000000000019884624838656,
48
+ "pad_token": "[PAD]",
49
+ "sep_token": "[SEP]",
50
+ "tokenizer_class": "PreTrainedTokenizerFast",
51
+ "unk_token": "[UNK]"
52
+ }
training_args.bin ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:75d68bdc84bf3bedec18d75073e12e7025bc56ac642767be31ec9e90b93db6b7
3
+ size 5112