training/src/processing/misc/process_validation_presc.py

from utils.presc_common import initialize_presc_data, track_medication


def main():

    # Read in data
    presc_file = "<YOUR_DATA_PATH>/EXAMPLE_STUDY_DATA/Pharmacy_Cohort3R.csv"
    presc = initialize_presc_data(presc_file)

    # Track salbutamol and rescue meds
    presc = track_medication(presc)

    # Reduce columns
    presc_reduced = presc[['SafeHavenID', 'PRESC_DATE', 'rescue_meds']]

    # Save data
    presc_reduced.to_pickle('<YOUR_DATA_PATH>/Model_E_Extracts/validation_presc_proc-og.pkl')


main()