| #./Installation.sh | |
| # source env39/bin/activate | |
| # | |
| # ./GNorm2.sh input output | |
| # | |
| INPUT=$1 | |
| OUTPUT=$2 | |
| # SR | |
| java -Xmx60G -Xms30G -jar GNormPlus.jar ${INPUT} tmp_SR setup.SR.txt | |
| # GNR+SA (CUDA_VISIBLE_DEVICES=3 ) | |
| python GeneNER_SpeAss_run.py -i tmp_SR -r tmp_GNR -a tmp_SA -n gnorm_trained_models/geneNER/GeneNER-Bioformer.h5 -s gnorm_trained_models/SpeAss/SpeAss-Bioformer.h5 | |
| # GN | |
| java -Xmx60G -Xms30G -jar GNormPlus.jar tmp_SA ${OUTPUT} setup.GN.txt | |
| #rm tmp_SR/* | |
| #rm tmp_GNR/* | |
| #rm tmp_SA/* | |