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Demo_ProTrek_650M_UniRef50

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LTEnjoy commited on May 23

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83aa8e9

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1 Parent(s): fe880bd

Add application file

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demo/modules/compute_score.py +9 -9

demo/modules/compute_score.py CHANGED Viewed

@@ -8,21 +8,21 @@ input_types = ["protein sequence", "protein structure", "text"]
 input_examples = {
     "protein sequence": [
-        "MSATAEQNARNPKGKGGFARTVSQRKRKRLFLIGGALAVLAVAVGLMLTAFNQDIRFFRTPADLTEQDMTSGARFRLGGLVEEGSVSRTGSELRFTVTDTIKTVKVVFEGIPPDLFREGQGVVAEGRFGSDGLFRADNVLAKHDENYVPKDLADSLKKKGVWEGK",
-        "MITLDWEKANGLITTVVQDATTKQVLMVAYMNQESLAKTMATGETWFWSRSRKTLWHKGATSGNIQTVKTIAVDCDADTLLVTVDPAGPACHTGHISCFYRHYPEGKDLT",
-        "MDLKQYVSEVQDWPKPGVSFKDITTIMDNGEAYGYATDKIVEYAKDRDVDIVVGPEARGFIIGCPVAYSMGIGFAPVRKEGKLPREVIRYEYDLEYGTNVLTMHKDAIKPGQRVLITDDLLATGGTIEAAIKLVEKLGGIVVGIAFIIELKYLNGIEKIKDYDVMSLISYDE"
     ],
     "protein structure": [
-        "dddddddddddddddpdpppvcppvnvvvvvvvvvvvvvvvvvvvvvvvvvvqdpqdedeqvrddpcqqpvqhkhkykafwappqwdddpqkiwtwghnppgiaieieghdappqddhrfikifiaghdpvrhtygdhidtdddpddddvvnvvvcvvvvndpdd",
-        "dddadcpvpvqkakefeaeppprdtadiaiagpvqvvvcvvpqwhwgqdpvvrdidgqcpvpvqiwrwddwdaddnrryiytythtpahsdpvrhvhpppadvvgpddpd",
-        "dplvvqwdwdaqpphhpdtdthcvscvvppvslvvqlvvvlvvcvvqvaqeeeeepdqrcsnrvsscvvvvhyywykyfpppddaawdwdwdddppgitiiithlpseaaageyeyegaeqalqprvlrvvvrcvvnnyddaeyeyqeyevcrvncvsvvvhhydyvyydpd"
     ],
     "text": [
-        "Proteins with zinc bindings.",
-        "Proteins locating at cell membrane.",
-        "Protein that serves as an enzyme."
     ]
 }

 input_examples = {
     "protein sequence": [
+        "MQLQRLGAPLLKRLVGGCIRQSTAPIMPCVVVSGSGGFLTPVRTYMPLPNDQSDFSPYIEIDLPSESRIQSLHKSGLAAQEWVACEKVHGTNFGIYLINQGDHEVVRFAKRSGIMDPNENFFGYHILIDEFTAQIRILNDLLKQKYGLSRVGRLVLNGELFGAKYKHPLVPKSEKWCTLPNGKKFPIAGVQIQREPFPQYSPELHFFAFDIKYSVSGAEEDFVLLGYDEFVEFSSKVPNLLYARALVRGTLDECLAFDVENFMTPLPALLGLGNYPLEGNLAEGVVIRHVRRGDPAVEKHNVSTIIKLRCSSFMELKHPGKQKELKETFIDTVRSGALRRVRGNVTVISDSMLPQVEAAANDLLLNNVSDGRLSNVLSKIGREPLLSGEVSQVDVALMLAKDALKDFLKEVDSLVLNTTLAFRKLLITNVYFESKRLVEQKWKELMQEEAAAQSEAIPPLSPAAPTKGE",
+        "MSLSTEQMLRDYPRSMQINGQIPKNAIHETYGNDGVDVFIAGSGPIGATYAKLCVEAGLRVVMVEIGAADSFYAVNAEEGTAVPYVPGYHKKNEIEFQKDIDRFVNVIKGALQQVSVPVRNQNVPTLDPGAWSAPPGSSAISNGKNPHQREFENLSAEAVTRGVGGMSTHWTCSTPRIHPPMESLPGIGRPKLSNDPAEDDKEWNELYSEAERLIGTSTKEFDESIRHTLVLRSLQDAYKDRQRIFRPLPLACHRLKNAPEYVEWHSAENLFHSIYNDDKQKKLFTLLTNHRCTRLALTGGYEKKIGAAEVRNLLATRNPSSQLDSYIMAKVYVLASGAIGNPQILYNSGFSGLQVTPRNDSLIPNLGRYITEQPMAFCQIVLRQEFVDSVRDDPYGLPWWKEAVAQHIAKNPTDALPIPFRDPEPQVTTPFTEEHPWHTQIHRDAFSYGAVGPEVDSRVIVDLRWFGATDPEANNLLVFQNDVQDGYSMPQPTFRYRPSTASNVRARKMMADMCEVASNLGGYLPTSPPQFMDPGLALHLAGTTRIGFDKATTVADNNSLVWDFANLYVAGNGTIRTGFGENPTLTSMCHAIKSARSIINTLKGGTDGKNTGEHRNL",
+        "MGVHECPAWLWLLLSLLSLPLGLPVLGAPPRLICDSRVLERYLLEAKEAENITTGCAEHCSLNENITVPDTKVNFYAWKRMEVGQQAVEVWQGLALLSEAVLRGQALLVNSSQPWEPLQLHVDKAVSGLRSLTTLLRALGAQKEAISPPDAASAAPLRTITADTFRKLFRVYSNFLRGKLKLYTGEACRTGDR"
     ],
     "protein structure": [
+        "ddddddddddddddddddddddddddddddddpdpddpddpqpdddfddpdqqlddadddfaaddpvqvvlcvvvvvlqakkfkwfdadffkkkwkwadpdpdidifidtnvgtdglqpddllclvcvvlsvqlvvllqvvvcvvvvapafrmkmfiwgkdalddpfppadadpdwhagsvgdidgsvpgdrdddpaqhahsdiaietewiwiarnsdpvriqtafqvvvcvsqvprpphhyidgqfmggnllnlldpqqpaaqlrnqqvvnqvgddpprggqfikmfrrpprppvvcvsvrhgihtdghlvnvcvvdppcsvvcccnrcvprnvvscvvvvndhdtdvlsrhhpvlsvllvqllvlldpvllvvldvvvdlpclqvvvqdllnsllsslvvsvvvsvvpddpvnvpgdpvsvvvssvsssvsssvvsvvcvvvvnvvsvvvvvvvddppdpdddpddd",
+        "dpdplvvqppdddplqappppfaadpvcvlvdpvaaaeeeeaqallsllllllclvlvgfyeyefqaeqpdwdddpddvpdddftqtqfapcqppvclqpqqvllvvqvvfwdwqeaefdqpppvpddppddhddppdgdddqqhdppfdpqqdlgqatwgghrntcqnhdpqfddawadadpvahqgtfdaldpdpvvrvvlvvvllvvlcvqlvkdqclqvpflqqcllqvllcvvcvvppwhkgggtgswhadpvhsldirhttsssscvvqrvdpssvssydyhyskhqqewhaghdpfgetawtkiarnccvvpvpdrgihigghrfyeypralprvllrcvssvqalqdpggdprhnqdqffalkwfwwkkkfkfffdpvsqvcqcvppppdpssnvqlvvqcvvcvpdpgsgdssrakhfmwtdadpvqqktktwidghhndddddppddpsrmimimiihwafrdrqfgwgfdppgdhpvrttrihtrddgdpvsvvsvvvrlvvsvvssvstgdtdprgpididrrnsvnlieqrqaedddsvngqayqlqhgpsyphygyfdrnhrngigngdcvsvrssssvsnsvvsscvvvvdpdddppdddddd",
+        "ddppppdcvvvvvvvvvppppppvppldplvvlldvvllvvqlvllvvllvvcvvpdpnfflqdwqkafdlddpvvvvvpddlllllqlllvrlvsllvrlvsslvslvpdpdrdvvnnvssvvlnvssvvvnvssvslvsvvsnppddppprdddgdididrgssvssvsvssnsvgsvvvssvvssvvvvd"
     ],
     "text": [
+        "RNA-editing ligase in kinetoplastid mitochondrial.",
+        "Oxidase which catalyzes the oxidation of various aldopyranoses and disaccharides.",
+        "Erythropoietin for regulation of erythrocyte proliferation and differentiation."
     ]
 }