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Running
on
T4
Running
on
T4
Update demo/modules/init_model.py
Browse files
demo/modules/init_model.py
CHANGED
@@ -8,12 +8,12 @@ from model.ProtTrek.protrek_trimodal_model import ProTrekTrimodalModel
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def load_model():
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config = {
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"protein_config": "/tmp/
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"text_config": "/tmp/
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"structure_config": "/tmp/
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"load_protein_pretrained": False,
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"load_text_pretrained": False,
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"from_checkpoint": "/tmp/
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}
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model = ProTrekTrimodalModel(**config)
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@@ -22,7 +22,7 @@ def load_model():
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def load_index():
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index_dir = "/tmp/
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all_index = {}
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# Load protein sequence index
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def load_model():
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config = {
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"protein_config": "/tmp/ProTrek_650M_UniRef50/esm2_t33_650M_UR50D",
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"text_config": "/tmp/ProTrek_650M_UniRef50/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext",
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"structure_config": "/tmp/ProTrek_650M_UniRef50/foldseek_t30_150M",
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"load_protein_pretrained": False,
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"load_text_pretrained": False,
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"from_checkpoint": "/tmp/ProTrek_650M_UniRef50/ProTrek_650M_UniRef50.pt"
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}
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model = ProTrekTrimodalModel(**config)
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def load_index():
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index_dir = "/tmp/faiss_index_ProTrek_650M_UniRef50"
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all_index = {}
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# Load protein sequence index
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