wenkai commited on
Commit
43b95d1
1 Parent(s): c3846ee

Update app.py

Browse files
Files changed (1) hide show
  1. app.py +5 -4
app.py CHANGED
@@ -135,7 +135,7 @@ def generate_caption(protein, prompt):
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  if len(sim_list) > 0:
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  t_standard = sim_list[0]
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  if t_standard not in temp:
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- pred_terms.append(t_standard+f'(prob)')
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  temp.append(t_standard)
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  res_str = f"Based on the given amino acid sequence, the proteinappears to have a primary function of {', '.join(pred_terms)}"
@@ -174,18 +174,19 @@ with gr.Blocks(css=css) as demo:
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  with gr.Column():
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  input_protein = gr.Textbox(type="text", label="Upload sequence")
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  # model_selector = gr.Dropdown(choices=list(models.keys()), label="Model", value='microsoft/Florence-2-large')
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- prompt = gr.Textbox(type="text", label="Prompt")
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  submit_btn = gr.Button(value="Submit")
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  with gr.Column():
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  output_text = gr.Textbox(label="Output Text")
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- # index 99, 127, 266, 738, 1060
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  gr.Examples(
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  examples=[
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  ["MKTLLLTLVVVTIVCLDLGNSLKCYVSREGKTQTCPEGEKLCEKYAVSYFHDGRWRYRYECTSACHRGPYNVCCSTDLCNK", 'Micrurus'],
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  ["MSSSAGSGHQPSQSRAIPTRTVAISDAAQLPHDYCTTPGGTLFSTTPGGTRIIYDRKFLLDRRNSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDRKHAVGDDAQFEMDI", 'Homo'],
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  ["MKTLALFLVLVCVLGLVQSWEWPWNRKPTKFPIPSPNPRDKWCRLNLGPAWGGRC", 'Sophophora'],
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  ["MAARGAMLRYLRVNVNPTIQNPRECVLPFSILLRRFSEEVRGSFLDKSEVTDRVLSVVKNFQKVDPSKVTPKANFQNDLGLDSLDSVEVVMALEEEFGFEIPDNEADKIQSIDLAVDFIASHPQAK", 'Arabidopsis'],
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- ["MAAAGGARLLRAASAVLGGPAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSLSVSARARSSSEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDVGKTS", 'Homo']
 
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  ],
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  inputs=[input_protein, prompt],
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  outputs=[output_text],
 
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  if len(sim_list) > 0:
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  t_standard = sim_list[0]
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  if t_standard not in temp:
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+ pred_terms.append(t_standard+f'({prob})')
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  temp.append(t_standard)
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  res_str = f"Based on the given amino acid sequence, the proteinappears to have a primary function of {', '.join(pred_terms)}"
 
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  with gr.Column():
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  input_protein = gr.Textbox(type="text", label="Upload sequence")
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  # model_selector = gr.Dropdown(choices=list(models.keys()), label="Model", value='microsoft/Florence-2-large')
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+ prompt = gr.Textbox(type="text", label="Species Prompt")
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  submit_btn = gr.Button(value="Submit")
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  with gr.Column():
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  output_text = gr.Textbox(label="Output Text")
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+
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  gr.Examples(
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  examples=[
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  ["MKTLLLTLVVVTIVCLDLGNSLKCYVSREGKTQTCPEGEKLCEKYAVSYFHDGRWRYRYECTSACHRGPYNVCCSTDLCNK", 'Micrurus'],
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  ["MSSSAGSGHQPSQSRAIPTRTVAISDAAQLPHDYCTTPGGTLFSTTPGGTRIIYDRKFLLDRRNSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDRKHAVGDDAQFEMDI", 'Homo'],
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  ["MKTLALFLVLVCVLGLVQSWEWPWNRKPTKFPIPSPNPRDKWCRLNLGPAWGGRC", 'Sophophora'],
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  ["MAARGAMLRYLRVNVNPTIQNPRECVLPFSILLRRFSEEVRGSFLDKSEVTDRVLSVVKNFQKVDPSKVTPKANFQNDLGLDSLDSVEVVMALEEEFGFEIPDNEADKIQSIDLAVDFIASHPQAK", 'Arabidopsis'],
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+ ["MAAAGGARLLRAASAVLGGPAGRWLHHAGSRAGSSGLLRNRGPGGSAEASRSLSVSARARSSSEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDVGKTS", 'Homo'],
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+ ['MASAELSREENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEEGRGNEDRVTLIKDYRGKIETELTKICDGILKLLETHLVPSSTAPESKVFYLKMKGDYYRYLAEFKTGAERKDAAENTMVAYKAAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDISEDPAEEIREAPKRDSSEGQ', 'Zea']
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  ],
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  inputs=[input_protein, prompt],
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  outputs=[output_text],