lavis/projects/blip2/train/reviewed_function_ft.yaml

 # Copyright (c) 2022, salesforce.com, inc.
 # All rights reserved.
 # SPDX-License-Identifier: BSD-3-Clause
 # For full license text, see the LICENSE file in the repo root or https://opensource.org/licenses/BSD-3-Clause

model:
  arch: blip2_protein_opt
  model_type: pretrain_protein_opt2.7b
  load_pretrained: True
  # intialize stage 2 pretraining from stage 1 pretrained model
  #  pretrained: "/home/nilin/LAVIS/lavis/output/BLIP2/Pretrain_stage2/GO_completed/checkpoint_54.pth"
  pretrained: "/cluster/home/wenkai/LAVIS/lavis/output/BLIP2/Pretrain_stage2/20230924220/checkpoint_5.pth"
  use_grad_checkpoint: True
  freeze_vit: False
  max_protein_len: 600
  max_txt_len: 25

datasets:
  GO_protein_function:
    text_processor:
        train:
          name: "blip_caption"

run:
  task: captioning
  # optimizer
  lr_sched: "linear_warmup_cosine_lr"
  init_lr: 1e-5
  min_lr: 0
  warmup_lr: 1e-8
  warmup_steps: 1000
  weight_decay: 0.05
  max_epoch: 5
  batch_size_train: 4
  batch_size_eval: 4
  num_workers: 8
  accum_grad_iters: 1

  max_len: 25
  min_len: 1
  num_beams: 5

  seed: 42
  output_dir: "output/BLIP2/Function_reviewed"

  amp: True
  resume_ckpt_path: null

  evaluate: False
  train_splits: ["train"]
  valid_splits: ["val"]
  test_splits: ["test"]

  device: "cuda"
  world_size: 1
  dist_url: "env://"
  distributed: True