lavis/projects/blip2/eval/caption_protein_eval.yaml

 # Copyright (c) 2022, salesforce.com, inc.
 # All rights reserved.
 # SPDX-License-Identifier: BSD-3-Clause
 # For full license text, see the LICENSE file in the repo root or https://opensource.org/licenses/BSD-3-Clause


model:
  #use_grad_checkpoint: False
  #load_finetuned: True
  #finetuned: "lavis/output/BLIP2/Pretrain_stage2/20230812160/checkpoint_75.pth"
  arch: blip2_protein_mistral
  model_type: pretrain_protein_mistral7b
  load_pretrained: True
  #intialize stage 2 pretraining from stage 1 pretrained model
  pretrained: "lavis/output/BLIP2/Pretrain_stage2/20240408161/checkpoint_2.pth"
  freeze_vit: True
  max_protein_len: 1000
  max_txt_len: 150
  num_query_token: 32
  get_eval: True
  esm_size: "3b"

datasets:
  GO_protein_function:
    text_processor:
        train:
          name: "blip_caption" 

run:
  task: captioning
  # optimizer
  batch_size_train: 1
  batch_size_eval: 1
  num_workers: 4

  max_len: 32
  min_len: 1
  num_beams: 5

  seed: 42
  output_dir: "output/BLIP2/protein_eval"

  evaluate: True
  test_splits: ["test"]
  report_metric: False

  device: "cuda"
  world_size: 1
  dist_url: "env://"
  distributed: True