Dockerfile

FROM rocker/shiny-verse:4.3.0

# Workaround for renv cache
RUN mkdir /.cache
RUN chmod 777 /.cache

WORKDIR /code


RUN install2.r --error \
    BiocManager 
CMD ["R", "--quiet", "-e", "BiocManager::install("cBioPortalData")"]


RUN install2.r --error \
    shiny \
    DT \
    rhino \
    data.table \
    g3viz \
    gargoyle \
    thematic \
    stats \
    plotly \
    shinyjs 

# Install development packages from GitHub
RUN installGithub.r \
    rstudio/bslib \
    rstudio/httpuv \
    RinteRface/bs4Dash

COPY . .

# Copy application code
COPY . .

# Install dependencies
#RUN Rscript -e 'options(renv.config.cache.enabled = FALSE); renv::restore(prompt = FALSE)'

CMD ["R", "--quiet", "-e", "shiny::runApp(host='0.0.0.0', port=7860)"]