|
box::use( |
|
shiny[bootstrapPage, div, icon, moduleServer, fluidRow, NS, renderUI, tags, uiOutput], |
|
bs4Dash[box, dashboardPage, tabItems, tabItem, sidebarMenu, menuItem, dashboardHeader, column, dashboardBrand, dashboardSidebar, dashboardBody], |
|
thematic[thematic_shiny], |
|
shinyjs[useShinyjs, runjs], |
|
gargoyle[init] |
|
) |
|
|
|
box::use( |
|
app/logic/data_preprocessor[preprocess_data], |
|
app/logic/data_preprocessor[preprocess_maf_data] |
|
) |
|
|
|
box::use( |
|
app/view/table, |
|
app/view/sankey, |
|
app/view/lollipop, |
|
app/view/browser |
|
) |
|
|
|
thematic_shiny() |
|
|
|
|
|
ui <- function(id) { |
|
ns <- NS(id) |
|
dashboardPage( |
|
header = dashboardHeader( |
|
title = "VarWiz", |
|
skin = "dark", |
|
status = "white" |
|
), |
|
dark = NULL, |
|
help = NULL, |
|
sidebar = dashboardSidebar( |
|
collapsed = TRUE, |
|
status = "navy", |
|
skin = "dark", |
|
sidebarMenu( |
|
id = "side_menu", |
|
div(class = "menu-tab", menuItem("Visualization", tabName = "visualization_tab", icon = icon("chart-line"))), |
|
div(class = "menu-tab", menuItem("Browse data", tabName = "browse_tab", icon = icon("table"))), |
|
div(class = "menu-tab", menuItem("About", tabName = "about_tab", icon = icon("book-open"))), |
|
div(class = "menu-tab", menuItem("Start Tutorial", tabName = "tutorial", icon = icon("play"))) |
|
) |
|
), |
|
body = dashboardBody( |
|
tags$head( |
|
tags$script( |
|
"$(function() { |
|
$('[data-card-widget=\"maximize\"]').on('click', function() { |
|
setTimeout(function() { |
|
var isMaximized = $('html').hasClass('maximized-card'); |
|
if (isMaximized) { |
|
$('#app-sankey-sankey').css('height', '1000px'); |
|
} else { |
|
$('#app-sankey-sankey').css('height', '400px'); |
|
} |
|
}, 300); |
|
$('#app-sankey-sankey').trigger('resize'); |
|
}); |
|
}); |
|
" |
|
) |
|
), |
|
|
|
useShinyjs(), |
|
tabItems( |
|
tabItem( |
|
tabName = "visualization_tab", |
|
fluidRow( |
|
column( |
|
width = 9, |
|
sankey$ui(ns("sankey")), |
|
lollipop$ui(ns("lollipop")) |
|
), |
|
column( |
|
width = 3, |
|
table$ui(ns("table")), |
|
), |
|
) |
|
), |
|
|
|
tabItem( |
|
tabName = "browse_tab", |
|
browser$ui(ns("browser")) |
|
|
|
), |
|
|
|
tabItem( |
|
tabName = "about_tab" |
|
) |
|
) |
|
|
|
|
|
|
|
) |
|
) |
|
} |
|
|
|
|
|
server <- function(id) { |
|
moduleServer(id, function(input, output, session) { |
|
init("reset_sankey") |
|
|
|
|
|
data <- preprocess_maf_data() |
|
browser$server("browser", data) |
|
selected_features <- table$server("table", data) |
|
selected_gene_rval <- sankey$server("sankey", data, selected_features()[[1]], selected_features()[[2]], selected_features()[[3]]) |
|
lollipop$server("lollipop", data, selected_gene_rval) |
|
}) |
|
} |
|
|
