Sonja Topf commited on
Commit
e4f4cf0
·
1 Parent(s): a78b381

changed column names

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Files changed (1) hide show
  1. predict.py +2 -13
predict.py CHANGED
@@ -19,18 +19,7 @@ def predict(smiles_list):
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  set_seed(0)
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  # tox21 targets
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  TARGET_NAMES = [
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- "NR-AR",
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- "NR-AR-LBD",
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- "NR-AhR",
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- "NR-Aromatase",
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- "NR-ER",
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- "NR-ER-LBD",
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- "NR-PPAR-gamma",
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- "SR-ARE",
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- "SR-ATAD5",
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- "SR-HSE",
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- "SR-MMP",
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- "SR-p53",
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  ]
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  DEVICE = torch.device("cuda" if torch.cuda.is_available() else "cpu")
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  print(f"Received {len(smiles_list)} SMILES strings")
@@ -62,7 +51,7 @@ def predict(smiles_list):
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  except Exception as e:
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  # If SMILES fails, return zeros
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- pred_dict = {t: 0.0 for t in TARGET_NAMES}
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  predictions[smiles] = pred_dict
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  return predictions
 
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  set_seed(0)
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  # tox21 targets
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  TARGET_NAMES = [
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+ "NR-AhR","NR-AR","NR-AR-LBD","NR-Aromatase","NR-ER","NR-ER-LBD","NR-PPAR-gamma","SR-ARE","SR-ATAD5","SR-HSE","SR-MMP","SR-p53"
 
 
 
 
 
 
 
 
 
 
 
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  ]
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  DEVICE = torch.device("cuda" if torch.cuda.is_available() else "cpu")
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  print(f"Received {len(smiles_list)} SMILES strings")
 
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  except Exception as e:
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  # If SMILES fails, return zeros
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+ pred_dict = {t: 0.5 for t in TARGET_NAMES}
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  predictions[smiles] = pred_dict
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  return predictions