app.py

import gradio as gr
import os

from langchain_community.document_loaders import PyPDFLoader
from langchain.text_splitter import RecursiveCharacterTextSplitter
from langchain_community.vectorstores import Chroma
from langchain.chains import ConversationalRetrievalChain
from langchain_community.embeddings import HuggingFaceEmbeddings 
from langchain_community.llms import HuggingFacePipeline
from langchain.chains import ConversationChain
from langchain.memory import ConversationBufferMemory
from langchain_community.llms import HuggingFaceEndpoint

from pathlib import Path
import chromadb
from unidecode import unidecode

from transformers import AutoTokenizer
import transformers
import torch
import tqdm 
import accelerate
import re



# default_persist_directory = './chroma_HF/'
list_llm = ["mistralai/Mistral-7B-Instruct-v0.2", "mistralai/Mixtral-8x7B-Instruct-v0.1", "mistralai/Mistral-7B-Instruct-v0.1", \
    "google/gemma-7b-it","google/gemma-2b-it", \
    "HuggingFaceH4/zephyr-7b-beta", "HuggingFaceH4/zephyr-7b-gemma-v0.1", \
    "meta-llama/Llama-2-7b-chat-hf", "microsoft/phi-2", \
    "TinyLlama/TinyLlama-1.1B-Chat-v1.0", "mosaicml/mpt-7b-instruct", "tiiuae/falcon-7b-instruct", \
    "google/flan-t5-xxl" , "core42/jais-13b"
]
list_llm_simple = [os.path.basename(llm) for llm in list_llm]

# Load PDF document and create doc splits
def load_doc(list_file_path, chunk_size, chunk_overlap):
    # Processing for one document only
    # loader = PyPDFLoader(file_path)
    # pages = loader.load()
    loaders = [PyPDFLoader(x) for x in list_file_path]
    pages = []
    for loader in loaders:
        pages.extend(loader.load())
    # text_splitter = RecursiveCharacterTextSplitter(chunk_size = 600, chunk_overlap = 50)
    text_splitter = RecursiveCharacterTextSplitter(
        chunk_size = chunk_size, 
        chunk_overlap = chunk_overlap)
    doc_splits = text_splitter.split_documents(pages)
    return doc_splits


# Create vector database
def create_db(splits, collection_name):
    embedding = HuggingFaceEmbeddings()
    new_client = chromadb.EphemeralClient()
    vectordb = Chroma.from_documents(
        documents=splits,
        embedding=embedding,
        client=new_client,
        collection_name=collection_name,
        # persist_directory=default_persist_directory
    )
    return vectordb


# Load vector database
def load_db():
    embedding = HuggingFaceEmbeddings()
    vectordb = Chroma(
        # persist_directory=default_persist_directory, 
        embedding_function=embedding)
    return vectordb


# Initialize langchain LLM chain
def initialize_llmchain(llm_model, temperature, max_tokens, top_k, vector_db, progress=gr.Progress()):
    progress(0.1, desc="Initializing HF tokenizer...")
    # HuggingFacePipeline uses local model
    # Note: it will download model locally...
    # tokenizer=AutoTokenizer.from_pretrained(llm_model)
    # progress(0.5, desc="Initializing HF pipeline...")
    # pipeline=transformers.pipeline(
    #     "text-generation",
    #     model=llm_model,
    #     tokenizer=tokenizer,
    #     torch_dtype=torch.bfloat16,
    #     trust_remote_code=True,
    #     device_map="auto",
    #     # max_length=1024,
    #     max_new_tokens=max_tokens,
    #     do_sample=True,
    #     top_k=top_k,
    #     num_return_sequences=1,
    #     eos_token_id=tokenizer.eos_token_id
    #     )
    # llm = HuggingFacePipeline(pipeline=pipeline, model_kwargs={'temperature': temperature})
    
    # HuggingFaceHub uses HF inference endpoints
    progress(0.5, desc="Initializing HF Hub...")
    # Use of trust_remote_code as model_kwargs
    # Warning: langchain issue
    # URL: https://github.com/langchain-ai/langchain/issues/6080
    if llm_model == "mistralai/Mixtral-8x7B-Instruct-v0.1":
        llm = HuggingFaceEndpoint(
            repo_id=llm_model, 
            # model_kwargs={"temperature": temperature, "max_new_tokens": max_tokens, "top_k": top_k, "load_in_8bit": True}
            temperature = temperature,
            max_new_tokens = max_tokens,
            top_k = top_k,
            load_in_8bit = True,
        )
    elif llm_model in ["HuggingFaceH4/zephyr-7b-gemma-v0.1","mosaicml/mpt-7b-instruct"]:
        raise gr.Error("LLM model is too large to be loaded automatically on free inference endpoint")
        llm = HuggingFaceEndpoint(
            repo_id=llm_model, 
            temperature = temperature,
            max_new_tokens = max_tokens,
            top_k = top_k,
        )
    elif llm_model == "microsoft/phi-2":
        raise gr.Error("phi-2 model requires 'trust_remote_code=True', currently not supported by langchain HuggingFaceHub...")
        llm = HuggingFaceEndpoint(
            repo_id=llm_model, 
            # model_kwargs={"temperature": temperature, "max_new_tokens": max_tokens, "top_k": top_k, "trust_remote_code": True, "torch_dtype": "auto"}
            temperature = temperature,
            max_new_tokens = max_tokens,
            top_k = top_k,
            trust_remote_code = True,
            torch_dtype = "auto",
        )
    elif llm_model == "TinyLlama/TinyLlama-1.1B-Chat-v1.0":
        llm = HuggingFaceEndpoint(
            repo_id=llm_model, 
            # model_kwargs={"temperature": temperature, "max_new_tokens": 250, "top_k": top_k}
            temperature = temperature,
            max_new_tokens = 250,
            top_k = top_k,
        )
    elif llm_model == "meta-llama/Llama-2-7b-chat-hf":
        raise gr.Error("Llama-2-7b-chat-hf model requires a Pro subscription...")
        llm = HuggingFaceEndpoint(
            repo_id=llm_model, 
            # model_kwargs={"temperature": temperature, "max_new_tokens": max_tokens, "top_k": top_k}
            temperature = temperature,
            max_new_tokens = max_tokens,
            top_k = top_k,
        )
    else:
        llm = HuggingFaceEndpoint(
            repo_id=llm_model, 
            # model_kwargs={"temperature": temperature, "max_new_tokens": max_tokens, "top_k": top_k, "trust_remote_code": True, "torch_dtype": "auto"}
            # model_kwargs={"temperature": temperature, "max_new_tokens": max_tokens, "top_k": top_k}
            temperature = temperature,
            max_new_tokens = max_tokens,
            top_k = top_k,
        )
    
    progress(0.75, desc="Defining buffer memory...")
    memory = ConversationBufferMemory(
        memory_key="chat_history",
        output_key='answer',
        return_messages=True
    )
    # retriever=vector_db.as_retriever(search_type="similarity", search_kwargs={'k': 3})
    retriever=vector_db.as_retriever()
    progress(0.8, desc="Defining retrieval chain...")
    qa_chain = ConversationalRetrievalChain.from_llm(
        llm,
        retriever=retriever,
        chain_type="stuff", 
        memory=memory,
        # combine_docs_chain_kwargs={"prompt": your_prompt})
        return_source_documents=True,
        #return_generated_question=False,
        verbose=False,
    )
    progress(0.9, desc="Done!")
    return qa_chain


# Generate collection name for vector database
#  - Use filepath as input, ensuring unicode text
def create_collection_name(filepath):
    # Extract filename without extension
    collection_name = Path(filepath).stem
    # Fix potential issues from naming convention
    ## Remove space
    collection_name = collection_name.replace(" ","-") 
    ## ASCII transliterations of Unicode text
    collection_name = unidecode(collection_name)
    ## Remove special characters
    #collection_name = re.findall("[\dA-Za-z]*", collection_name)[0]
    collection_name = re.sub('[^A-Za-z0-9]+', '-', collection_name)
    ## Limit length to 50 characters
    collection_name = collection_name[:50]
    ## Minimum length of 3 characters
    if len(collection_name) < 3:
        collection_name = collection_name + 'xyz'
    ## Enforce start and end as alphanumeric character
    if not collection_name[0].isalnum():
        collection_name = 'A' + collection_name[1:]
    if not collection_name[-1].isalnum():
        collection_name = collection_name[:-1] + 'Z'
    print('Filepath: ', filepath)
    print('Collection name: ', collection_name)
    return collection_name


# Initialize database
def initialize_database(list_file_obj, chunk_size, chunk_overlap, progress=gr.Progress()):
    # Create list of documents (when valid)
    list_file_path = [x.name for x in list_file_obj if x is not None]
    # Create collection_name for vector database
    progress(0.1, desc="Creating collection name...")
    collection_name = create_collection_name(list_file_path[0])
    progress(0.25, desc="Loading document...")
    # Load document and create splits
    doc_splits = load_doc(list_file_path, chunk_size, chunk_overlap)
    # Create or load vector database
    progress(0.5, desc="Generating vector database...")
    # global vector_db
    vector_db = create_db(doc_splits, collection_name)
    progress(0.9, desc="Done!")
    return vector_db, collection_name, "Complete!"


def initialize_LLM(llm_option, llm_temperature, max_tokens, top_k, vector_db, progress=gr.Progress()):
    # print("llm_option",llm_option)
    llm_name = list_llm[llm_option]
    print("llm_name: ",llm_name)
    qa_chain = initialize_llmchain(llm_name, llm_temperature, max_tokens, top_k, vector_db, progress)
    return qa_chain, "Complete!"


def format_chat_history(message, chat_history):
    formatted_chat_history = []
    for user_message, bot_message in chat_history:
        formatted_chat_history.append(f"User: {user_message}")
        formatted_chat_history.append(f"Assistant: {bot_message}")
    return formatted_chat_history
    

def conversation(qa_chain, message, history):
    formatted_chat_history = format_chat_history(message, history)
    #print("formatted_chat_history",formatted_chat_history)
   
    # Generate response using QA chain
    response = qa_chain({"question": message, "chat_history": formatted_chat_history})
    response_answer = response["answer"]
    if response_answer.find("Helpful Answer:") != -1:
        response_answer = response_answer.split("Helpful Answer:")[-1]
    response_sources = response["source_documents"]
    response_source1 = response_sources[0].page_content.strip()
    response_source2 = response_sources[1].page_content.strip()
    response_source3 = response_sources[2].page_content.strip()
    # Langchain sources are zero-based
    response_source1_page = response_sources[0].metadata["page"] + 1
    response_source2_page = response_sources[1].metadata["page"] + 1
    response_source3_page = response_sources[2].metadata["page"] + 1
    # print ('chat response: ', response_answer)
    # print('DB source', response_sources)
    
    # Append user message and response to chat history
    new_history = history + [(message, response_answer)]
    # return gr.update(value=""), new_history, response_sources[0], response_sources[1] 
    return qa_chain, gr.update(value=""), new_history, response_source1, response_source1_page, response_source2, response_source2_page, response_source3, response_source3_page
    

def upload_file(file_obj):
    list_file_path = []
    for idx, file in enumerate(file_obj):
        file_path = file_obj.name
        list_file_path.append(file_path)
    # print(file_path)
    # initialize_database(file_path, progress)
    return list_file_path


def demo():
    with gr.Blocks(theme="base") as demo:
        vector_db = gr.State()
        qa_chain = gr.State()
        collection_name = gr.State()
        
        gr.Markdown(
        """<center><h2>PDF-based chatbot (powered by LangChain and open-source LLMs)</center></h2>
        <h3>Ask any questions about your PDF documents, along with follow-ups</h3>
        <b>Note:</b> This AI assistant performs retrieval-augmented generation from your PDF documents. \
        When generating answers, it takes past questions into account (via conversational memory), and includes document references for clarity purposes.</i>
        <br><b>Warning:</b> This space uses the free CPU Basic hardware from Hugging Face. Some steps and LLM models used below (free inference endpoints) can take some time to generate an output.<br>
        """)
        with gr.Tab("Step 1 - Document pre-processing"):
            with gr.Row():
                document = gr.Files(height=100, file_count="multiple", file_types=["pdf"], interactive=True, label="Upload your PDF documents (single or multiple)")
                # upload_btn = gr.UploadButton("Loading document...", height=100, file_count="multiple", file_types=["pdf"], scale=1)
            with gr.Row():
                db_btn = gr.Radio(["ChromaDB"], label="Vector database type", value = "ChromaDB", type="index", info="Choose your vector database")
            with gr.Accordion("Advanced options - Document text splitter", open=False):
                with gr.Row():
                    slider_chunk_size = gr.Slider(minimum = 100, maximum = 1000, value=600, step=20, label="Chunk size", info="Chunk size", interactive=True)
                with gr.Row():
                    slider_chunk_overlap = gr.Slider(minimum = 10, maximum = 200, value=40, step=10, label="Chunk overlap", info="Chunk overlap", interactive=True)
            with gr.Row():
                db_progress = gr.Textbox(label="Vector database initialization", value="None")
            with gr.Row():
                db_btn = gr.Button("Generate vector database...")
            
        with gr.Tab("Step 2 - QA chain initialization"):
            with gr.Row():
                llm_btn = gr.Radio(list_llm_simple, \
                    label="LLM models", value = list_llm_simple[0], type="index", info="Choose your LLM model")
            with gr.Accordion("Advanced options - LLM model", open=False):
                with gr.Row():
                    slider_temperature = gr.Slider(minimum = 0.0, maximum = 1.0, value=0.7, step=0.1, label="Temperature", info="Model temperature", interactive=True)
                with gr.Row():
                    slider_maxtokens = gr.Slider(minimum = 224, maximum = 4096, value=1024, step=32, label="Max Tokens", info="Model max tokens", interactive=True)
                with gr.Row():
                    slider_topk = gr.Slider(minimum = 1, maximum = 10, value=3, step=1, label="top-k samples", info="Model top-k samples", interactive=True)
            with gr.Row():
                llm_progress = gr.Textbox(value="None",label="QA chain initialization")
            with gr.Row():
                qachain_btn = gr.Button("Initialize question-answering chain...")

        with gr.Tab("Step 3 - Conversation with chatbot"):
            chatbot = gr.Chatbot(height=300)
            with gr.Accordion("Advanced - Document references", open=False):
                with gr.Row():
                    doc_source1 = gr.Textbox(label="Reference 1", lines=2, container=True, scale=20)
                    source1_page = gr.Number(label="Page", scale=1)
                with gr.Row():
                    doc_source2 = gr.Textbox(label="Reference 2", lines=2, container=True, scale=20)
                    source2_page = gr.Number(label="Page", scale=1)
                with gr.Row():
                    doc_source3 = gr.Textbox(label="Reference 3", lines=2, container=True, scale=20)
                    source3_page = gr.Number(label="Page", scale=1)
            with gr.Row():
                msg = gr.Textbox(placeholder="Type message", container=True)
            with gr.Row():
                submit_btn = gr.Button("Submit")
                clear_btn = gr.ClearButton([msg, chatbot])
            
        # Preprocessing events
        #upload_btn.upload(upload_file, inputs=[upload_btn], outputs=[document])
        db_btn.click(initialize_database, \
            inputs=[document, slider_chunk_size, slider_chunk_overlap], \
            outputs=[vector_db, collection_name, db_progress])
        qachain_btn.click(initialize_LLM, \
            inputs=[llm_btn, slider_temperature, slider_maxtokens, slider_topk, vector_db], \
            outputs=[qa_chain, llm_progress]).then(lambda:[None,"",0,"",0,"",0], \
            inputs=None, \
            outputs=[chatbot, doc_source1, source1_page, doc_source2, source2_page, doc_source3, source3_page], \
            queue=False)

        # Chatbot events
        msg.submit(conversation, \
            inputs=[qa_chain, msg, chatbot], \
            outputs=[qa_chain, msg, chatbot, doc_source1, source1_page, doc_source2, source2_page, doc_source3, source3_page], \
            queue=False)
        submit_btn.click(conversation, \
            inputs=[qa_chain, msg, chatbot], \
            outputs=[qa_chain, msg, chatbot, doc_source1, source1_page, doc_source2, source2_page, doc_source3, source3_page], \
            queue=False)
        clear_btn.click(lambda:[None,"",0,"",0,"",0], \
            inputs=None, \
            outputs=[chatbot, doc_source1, source1_page, doc_source2, source2_page, doc_source3, source3_page], \
            queue=False)
    demo.queue().launch(debug=True)


if __name__ == "__main__":
    demo()