Joshua Kravitz
Initial commit
e284167
{
"task": {
"id": "rpob_bac_dna_phylogeny",
"display_name": "RpoB Bacterial Phylogeny",
"description": "Evaluate on RpoB phylogeny distance correlation task for Bacterial DNA sequences.",
"modality": "dna",
"type": "eds",
"datasets": [
{
"path": "tattabio/rpob_bac_dna_phylogeny_sequences",
"revision": "8e137d3fb8886d8739ce08d1918745444c7d30d6"
},
{
"path": "tattabio/rpob_bac_dna_phylogeny_distances",
"revision": "67339e271b2a1602208153d53d70d35ba6fa8876"
}
],
"primary_metric_id": "top_corr"
},
"model": {
"hf_name": "InstaDeepAI/nucleotide-transformer-v2-50m-multi-species",
"revision": "...",
"num_layers": 12,
"num_params": 55904972,
"embed_dim": 512
},
"dgeb_version": "0.0.0",
"results": [
{
"layer_number": 6,
"layer_display_name": "6",
"metrics": [
{
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"display_name": "cos_sim",
"description": null,
"value": 0.07434903594716476
},
{
"id": "manhattan",
"display_name": "manhattan",
"description": null,
"value": 0.08977856846092792
},
{
"id": "euclidean",
"display_name": "euclidean",
"description": null,
"value": 0.09222560782823379
},
{
"id": "top_corr",
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"description": null,
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}
]
},
{
"layer_number": 11,
"layer_display_name": "11",
"metrics": [
{
"id": "cos_sim",
"display_name": "cos_sim",
"description": null,
"value": 0.08630281284059531
},
{
"id": "manhattan",
"display_name": "manhattan",
"description": null,
"value": 0.09701233167900071
},
{
"id": "euclidean",
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},
{
"id": "top_corr",
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}
]
}
]
}