Umair Khan commited on
Commit
b0c2b35
·
1 Parent(s): 90e95be

explicitly rename index in .var

Browse files
Files changed (1) hide show
  1. app.py +2 -2
app.py CHANGED
@@ -48,7 +48,7 @@ PARQUET_EMB_COL = "tx1-70m"
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  # helper to read AnnData header
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  def read_anndata_header(fileobj):
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  adata = sc.read_h5ad(fileobj.name, backed="r")
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- adata.var = adata.var.reset_index(drop=False)
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  layers = list(adata.layers.keys())
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  var_cols = list(adata.var.columns)
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  obs_cols = list(adata.obs.columns)
@@ -155,7 +155,7 @@ def _embed(adata_bytes, layer_name, feature_col, use_symbols, progress):
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  # load into memory, subsetting if needed
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  adata = adata_backed[:limit, :].to_memory()
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- adata.var = adata.var.reset_index(drop=False)
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  try:
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  adata_backed.file.close()
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  except Exception:
 
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  # helper to read AnnData header
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  def read_anndata_header(fileobj):
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  adata = sc.read_h5ad(fileobj.name, backed="r")
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+ adata.var = adata.var.reset_index(drop=False, names="index")
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  layers = list(adata.layers.keys())
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  var_cols = list(adata.var.columns)
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  obs_cols = list(adata.obs.columns)
 
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  # load into memory, subsetting if needed
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  adata = adata_backed[:limit, :].to_memory()
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+ adata.var = adata.var.reset_index(drop=False, names="index")
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  try:
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  adata_backed.file.close()
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  except Exception: