adding model files locally for performance

helpers.py

@@ -40,7 +40,7 @@ def load_data(uploaded_file):
 @st.cache()
 def embedding_gen(data):
     logger.info('Calculating Embeddings')
-    return SentenceTransformer('allenai-specter').encode(data['Text'])
+    return SentenceTransformer('./sentence-transformers_allenai-specter').encode(data['Text'])
 
 
 @st.cache()

sentence-transformers_allenai-specter/.gitattributes

@@ -0,0 +1,16 @@
+*.bin.* filter=lfs diff=lfs merge=lfs -text
+*.lfs.* filter=lfs diff=lfs merge=lfs -text
+*.bin filter=lfs diff=lfs merge=lfs -text
+*.h5 filter=lfs diff=lfs merge=lfs -text
+*.tflite filter=lfs diff=lfs merge=lfs -text
+*.tar.gz filter=lfs diff=lfs merge=lfs -text
+*.ot filter=lfs diff=lfs merge=lfs -text
+*.onnx filter=lfs diff=lfs merge=lfs -text
+*.arrow filter=lfs diff=lfs merge=lfs -text
+*.ftz filter=lfs diff=lfs merge=lfs -text
+*.joblib filter=lfs diff=lfs merge=lfs -text
+*.model filter=lfs diff=lfs merge=lfs -text
+*.msgpack filter=lfs diff=lfs merge=lfs -text
+*.pb filter=lfs diff=lfs merge=lfs -text
+*.pt filter=lfs diff=lfs merge=lfs -text
+*.pth filter=lfs diff=lfs merge=lfs -text

sentence-transformers_allenai-specter/1_Pooling/config.json

@@ -0,0 +1,7 @@
+{
+  "word_embedding_dimension": 768,
+  "pooling_mode_cls_token": true,
+  "pooling_mode_mean_tokens": false,
+  "pooling_mode_max_tokens": false,
+  "pooling_mode_mean_sqrt_len_tokens": false
+}

sentence-transformers_allenai-specter/README.md

@@ -0,0 +1,89 @@
+---
+pipeline_tag: sentence-similarity
+tags:
+- sentence-transformers
+- feature-extraction
+- sentence-similarity
+license: apache-2.0
+---
+
+# allenai-specter
+
+This model is a conversion of the [AllenAI SPECTER](https://github.com/allenai/specter) model to [sentence-transformers](https://www.SBERT.net). It can be used to map the titles & abstracts of scientific publications to a vector space such that similar papers are close.
+
+
+## Usage (Sentence-Transformers)
+
+Using this model becomes easy when you have [sentence-transformers](https://www.SBERT.net) installed:
+
+```
+pip install -U sentence-transformers
+```
+
+Then you can use the model like this:
+
+```python
+from sentence_transformers import SentenceTransformer
+sentences = ["This is an example sentence", "Each sentence is converted"]
+
+model = SentenceTransformer('sentence-transformers/allenai-specter')
+embeddings = model.encode(sentences)
+print(embeddings)
+```
+
+
+
+## Usage (HuggingFace Transformers)
+Without [sentence-transformers](https://www.SBERT.net), you can use the model like this: First, you pass your input through the transformer model, then you have to apply the right pooling-operation on-top of the contextualized word embeddings.
+
+```python
+from transformers import AutoTokenizer, AutoModel
+import torch
+
+
+def cls_pooling(model_output, attention_mask):
+    return model_output[0][:,0]
+
+
+# Sentences we want sentence embeddings for
+sentences = ['This is an example sentence', 'Each sentence is converted']
+
+# Load model from HuggingFace Hub
+tokenizer = AutoTokenizer.from_pretrained('sentence-transformers/allenai-specter')
+model = AutoModel.from_pretrained('sentence-transformers/allenai-specter')
+
+# Tokenize sentences
+encoded_input = tokenizer(sentences, padding=True, truncation=True, return_tensors='pt')
+
+# Compute token embeddings
+with torch.no_grad():
+    model_output = model(**encoded_input)
+
+# Perform pooling. In this case, max pooling.
+sentence_embeddings = cls_pooling(model_output, encoded_input['attention_mask'])
+
+print("Sentence embeddings:")
+print(sentence_embeddings)
+```
+
+
+
+## Evaluation Results
+
+
+
+For an automated evaluation of this model, see the *Sentence Embeddings Benchmark*: [https://seb.sbert.net](https://seb.sbert.net?model_name=sentence-transformers/allenai-specter)
+
+
+
+## Full Model Architecture
+```
+SentenceTransformer(
+  (0): Transformer({'max_seq_length': 512, 'do_lower_case': False}) with Transformer model: BertModel 
+  (1): Pooling({'word_embedding_dimension': 768, 'pooling_mode_cls_token': True, 'pooling_mode_mean_tokens': False, 'pooling_mode_max_tokens': False, 'pooling_mode_mean_sqrt_len_tokens': False})
+)
+```
+
+## Citing & Authors
+
+See  [AllenAI SPECTER](https://github.com/allenai/specter) 

sentence-transformers_allenai-specter/config.json

@@ -0,0 +1,24 @@
+{
+  "_name_or_path": "old_models/allenai-specter/0_Transformer",
+  "architectures": [
+    "BertModel"
+  ],
+  "attention_probs_dropout_prob": 0.1,
+  "gradient_checkpointing": false,
+  "hidden_act": "gelu",
+  "hidden_dropout_prob": 0.1,
+  "hidden_size": 768,
+  "initializer_range": 0.02,
+  "intermediate_size": 3072,
+  "layer_norm_eps": 1e-12,
+  "max_position_embeddings": 512,
+  "model_type": "bert",
+  "num_attention_heads": 12,
+  "num_hidden_layers": 12,
+  "pad_token_id": 0,
+  "position_embedding_type": "absolute",
+  "transformers_version": "4.7.0",
+  "type_vocab_size": 2,
+  "use_cache": true,
+  "vocab_size": 31116
+}

sentence-transformers_allenai-specter/config_sentence_transformers.json

@@ -0,0 +1,7 @@
+{
+  "__version__": {
+    "sentence_transformers": "2.0.0",
+    "transformers": "4.7.0",
+    "pytorch": "1.9.0+cu102"
+  }
+}

sentence-transformers_allenai-specter/modules.json

@@ -0,0 +1,14 @@
+[
+  {
+    "idx": 0,
+    "name": "0",
+    "path": "",
+    "type": "sentence_transformers.models.Transformer"
+  },
+  {
+    "idx": 1,
+    "name": "1",
+    "path": "1_Pooling",
+    "type": "sentence_transformers.models.Pooling"
+  }
+]

sentence-transformers_allenai-specter/pytorch_model.bin

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e5bc6960694f086334de21eae028f3b38439d3581a3f7bf87f71c91311961d34
+size 439832305

sentence-transformers_allenai-specter/sentence_bert_config.json

@@ -0,0 +1,4 @@
+{
+  "max_seq_length": 512,
+  "do_lower_case": false
+}

sentence-transformers_allenai-specter/special_tokens_map.json

@@ -0,0 +1 @@
+{"unk_token": "[UNK]", "sep_token": "[SEP]", "pad_token": "[PAD]", "cls_token": "[CLS]", "mask_token": "[MASK]"}

sentence-transformers_allenai-specter/tokenizer_config.json

@@ -0,0 +1 @@
+{"do_lower_case": true, "unk_token": "[UNK]", "sep_token": "[SEP]", "pad_token": "[PAD]", "cls_token": "[CLS]", "mask_token": "[MASK]", "tokenize_chinese_chars": true, "strip_accents": null, "special_tokens_map_file": null, "name_or_path": "old_models/allenai-specter/0_Transformer", "do_basic_tokenize": true, "never_split": null}