SparkNLP_NER / streamlit_apps_config.py
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import os
PRODUCTION = False
if PRODUCTION:
prepath = "/Users/vkocaman/cache_pretrained/"
path = "/Users/vkocaman/cache_pretrained/2.4/"
jar_path = "/home/ubuntu/jars/"
input_folder = '/home/ubuntu/streamlit/dia/resources/'
rules_folder = '/home/ubuntu/streamlit/dia/resources/rules/'
else:
project_path = "F:/JSL/streamlit-demo-apps/"
prepath = "file:///E://JSL/SparkNLPSUITE/models/cache_pretrained/"
path = "file:///E://JSL/SparkNLPSUITE/models/cache_pretrained/2.4/"
jar_path = "file:///E:/JSL/Jars/streamlit4/"
rules_folder = "file:///E://JSL/SparkNLPSUITE/streamlit-demo-apps/resources/rules/"
models_folder = "file:///E://JSL/SparkNLPSUITE/models/"
ENTITIES_FOR_ICD10 = ['problem', 'diagnosis', 'procedure name', 'lab name', 'symptom_name', 'procedure_name', 'procedure', 'lab_name', 'pathological_formation', 'cancer']
LOGO_PATH = '../resources/jsl-logo.png'
available_models = []
#APP STYLE
MAX_WIDTH = 1600
PADDING_TOP = 0.25
PADDING_BOTTOM = 0.25
PADDING_RIGHT = 4
PADDING_LEFT = 4
COLOR = 'black'
BACKGROUND_COLOR = 'white'
HTML_WRAPPER = """<div class="scroll entities" style="overflow-x: auto; border: 1px solid #e6e9ef; border-radius: 0.25rem; padding: 0.25rem; margin-bottom: 2.5rem; white-space:pre-wrap">{}</div>"""
HTML_INDEX_WRAPPER = """<div ">{}</div>"""
STYLE_CONFIG_OLD = f"""
<style>
@import url('https://fonts.googleapis.com/css2?family=Montserrat:wght@300;400;500;600;700&display=swap');
*:not(text){{
font-family: Montserrat;
}}
.reportview-container .main .block-container{{
max-width: {MAX_WIDTH}px;
padding-top: {PADDING_TOP}rem;
padding-right: {PADDING_RIGHT}rem;
padding-left: {PADDING_LEFT}rem;
padding-bottom: {PADDING_BOTTOM}rem;
}}
.reportview-container .main {{
color: {COLOR};
background-color: {BACKGROUND_COLOR};
}}
div.scroll {{
margin:1px, 1px;
padding:1px;
width: 100%;
height: 500px;
overflow-x: hidden;
overflow-x: auto;
}}
.entity-wrapper{{
padding: 1px;
display: inline-grid;
text-align:center;
margin-bottom:1px;
border-radius: 5px 5px
}}
.entity-name{{
background: #f1f2f3;
color: #3c3e44;
padding: 1px;
border-color: #484b51;
border-width: medium;
border-radius: 5px 5px;
}}
.entity-type{{
color: #272727;
text-transform: uppercase;
font-family: roboto;
font-size: 13px;
}}
.reportview-container .markdown-text-container{{
font-family: roboto !important;
color: dimgray !important;
line-height: normal !important;
}}
.reportview-container h2
{{
font-weight: 400 !important;
font-size: 1.5rem !important;
line-height: 1.6!important;
}}
.reportview-container h2
{{
font-weight: 300 !important;
font-size: 1.3rem !important;
line-height: 1.4!important;
}}
</style>
"""
with open('./utils/style.css') as f:
STYLE_CONFIG_NEW = f.read()
STYLE_CONFIG = STYLE_CONFIG_OLD + '<style>{}</style>'.format(STYLE_CONFIG_NEW)
LABEL_COLORS = {'problem':'#0C8888',
'test':'#FF33C1',
'treatment':'#3196D4',
'multi':'#ccfff5',
'multi-tissue_structure':'#8dd8b4',
'cell':'#ffe6cc',
'organism':'#ffddcc',
'gene_or_gene_product':'#fff0b3',
'organ':'#e6e600',
'simple_chemical':'#ffd699',
'per':'#0C8888', 'pers':'#0C8888','person':'#0C8888',
'org':'#FF33C1',
'misc': '#3196D4', 'mis': '#3196D4',
'loc':'#5B00A3', 'location':'#5B00A3',
'drug':'#33BBFF',
'diagnosis':'#b5a1c9',
'maybe':'#FFB5C5',
'lab_result':'#3abd80',
'negated':'#CD3700',
'name':'#C0FF3E',
'lab_name':'#698B22',
'modifier':'#8B475D',
'symptom_name':'#CDB7B5',
'section_name':'#8B7D7B',
'procedure_name':'#48D1CC',
'grading':"#8c61e8",
'size':"#746b87",
'organism_substance':'#ffaa80',
'gender':'#ffacb7',
'age':'#ffe0ac',
'date': '#a6b1e1'
}