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Browse files- .gitignore +9 -0
- README.md +285 -12
- src/backend/gradio_cofoldinginput/templates/component/index.js +0 -0
- src/backend/gradio_cofoldinginput/templates/component/style.css +0 -0
- src/backend/gradio_cofoldinginput/templates/example/index.js +68 -57
- src/frontend/package-lock.json +0 -0
- src/frontend/package.json +17 -7
- src/frontend/tsconfig.json +17 -0
- src/pyproject.toml +3 -3
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dist/
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__pycache__/
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*.py[cod]
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node_modules
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README.md
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title: gradio_cofoldinginput V0.0.4
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colorTo: indigo
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sdk: docker
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pinned: false
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license: apache-2.0
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---
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# `gradio_cofoldinginput`
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<a href="https://pypi.org/project/gradio_cofoldinginput/" target="_blank"><img alt="PyPI - Version" src="https://img.shields.io/pypi/v/gradio_cofoldinginput"></a>
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Component to enter protein and DNA sequences + small molecules for cofolding
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## Installation
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```bash
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pip install gradio_cofoldinginput
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```
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## Usage
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```python
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import gradio as gr
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from gradio_cofoldinginput import CofoldingInput
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import json
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def predict(input):
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input = json.dumps(input)
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return input
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with gr.Blocks() as demo:
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inp=CofoldingInput(label="Input")
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# preinput = {"chains": [
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# {
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# "class": "DNA",
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# "sequence": "ATGCGT",
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# "chain": "A"
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# }
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# ], "covMods":[]
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# }
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# inp2=CofoldingInput(preinput, label="Input prefilled")
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btn = gr.Button("Submit")
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out = gr.HTML()
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btn.click(predict, inputs=[inp], outputs=[out])
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if __name__ == "__main__":
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demo.launch()
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```
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## `CofoldingInput`
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### Initialization
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<table>
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<thead>
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<tr>
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<th align="left">name</th>
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<th align="left" style="width: 25%;">type</th>
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<th align="left">default</th>
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<th align="left">description</th>
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</tr>
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</thead>
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<tbody>
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<tr>
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<td align="left"><code>value</code></td>
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<td align="left" style="width: 25%;">
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```python
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dict | None
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```
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</td>
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<td align="left"><code>{"chains": [], "covMods": []}</code></td>
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<td align="left">list of items.</td>
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</tr>
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<tr>
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<td align="left"><code>label</code></td>
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<td align="left" style="width: 25%;">
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```python
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str | None
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```
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</td>
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<td align="left"><code>None</code></td>
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<td align="left">The label for this component. Appears above the component and is also used as the header if there are a table of examples for this component. If None and used in a `gr.Interface`, the label will be the name of the parameter this component is assigned to.</td>
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</tr>
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<tr>
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<td align="left"><code>info</code></td>
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<td align="left" style="width: 25%;">
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```python
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str | None
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```
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</td>
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<td align="left"><code>None</code></td>
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<td align="left">additional component description.</td>
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</tr>
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<tr>
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<td align="left"><code>every</code></td>
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<td align="left" style="width: 25%;">
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```python
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float | None
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```
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</td>
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<td align="left"><code>None</code></td>
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<td align="left">If `value` is a callable, run the function 'every' number of seconds while the client connection is open. Has no effect otherwise. The event can be accessed (e.g. to cancel it) via this component's .load_event attribute.</td>
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</tr>
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<tr>
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<td align="left"><code>show_label</code></td>
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<td align="left" style="width: 25%;">
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```python
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bool | None
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```
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</td>
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<td align="left"><code>None</code></td>
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<td align="left">if True, will display label.</td>
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</tr>
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<tr>
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<td align="left"><code>container</code></td>
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<td align="left" style="width: 25%;">
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```python
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bool
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```
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</td>
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<td align="left"><code>True</code></td>
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<td align="left">If True, will place the component in a container - providing some extra padding around the border.</td>
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</tr>
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<tr>
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<td align="left"><code>scale</code></td>
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<td align="left" style="width: 25%;">
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```python
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int | None
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```
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</td>
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<td align="left"><code>None</code></td>
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<td align="left">relative size compared to adjacent Components. For example if Components A and B are in a Row, and A has scale=2, and B has scale=1, A will be twice as wide as B. Should be an integer. scale applies in Rows, and to top-level Components in Blocks where fill_height=True.</td>
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</tr>
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<tr>
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<td align="left"><code>min_width</code></td>
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<td align="left" style="width: 25%;">
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```python
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int
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```
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</td>
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<td align="left"><code>160</code></td>
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<td align="left">minimum pixel width, will wrap if not sufficient screen space to satisfy this value. If a certain scale value results in this Component being narrower than min_width, the min_width parameter will be respected first.</td>
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</tr>
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<tr>
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<td align="left"><code>interactive</code></td>
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<td align="left" style="width: 25%;">
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```python
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bool | None
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```
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</td>
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<td align="left"><code>None</code></td>
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<td align="left">if True, will be rendered as an editable textbox; if False, editing will be disabled. If not provided, this is inferred based on whether the component is used as an input or output.</td>
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</tr>
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<tr>
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<td align="left"><code>visible</code></td>
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<td align="left" style="width: 25%;">
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```python
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bool
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```
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</td>
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<td align="left"><code>True</code></td>
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<td align="left">If False, component will be hidden.</td>
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</tr>
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<tr>
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<td align="left"><code>elem_id</code></td>
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<td align="left" style="width: 25%;">
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```python
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str | None
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```
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</td>
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<td align="left"><code>None</code></td>
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<td align="left">An optional string that is assigned as the id of this component in the HTML DOM. Can be used for targeting CSS styles.</td>
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</tr>
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<tr>
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<td align="left"><code>autofocus</code></td>
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<td align="left" style="width: 25%;">
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```python
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bool
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```
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</td>
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<td align="left"><code>False</code></td>
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<td align="left">If True, will focus on the textbox when the page loads. Use this carefully, as it can cause usability issues for sighted and non-sighted users.</td>
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</tr>
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<tr>
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<td align="left"><code>autoscroll</code></td>
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<td align="left" style="width: 25%;">
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```python
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bool
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```
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</td>
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<td align="left"><code>True</code></td>
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<td align="left">None</td>
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</tr>
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<tr>
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<td align="left"><code>elem_classes</code></td>
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<td align="left" style="width: 25%;">
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```python
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list[str] | str | None
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```
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</td>
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<td align="left"><code>None</code></td>
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<td align="left">An optional list of strings that are assigned as the classes of this component in the HTML DOM. Can be used for targeting CSS styles.</td>
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</tr>
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<tr>
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<td align="left"><code>render</code></td>
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<td align="left" style="width: 25%;">
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```python
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bool
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```
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</td>
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<td align="left"><code>True</code></td>
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<td align="left">If False, component will not render be rendered in the Blocks context. Should be used if the intention is to assign event listeners now but render the component later.</td>
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</tr>
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</tbody></table>
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### Events
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| name | description |
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|:-----|:------------|
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| `change` | Triggered when the value of the CofoldingInput changes either because of user input (e.g. a user types in a textbox) OR because of a function update (e.g. an image receives a value from the output of an event trigger). See `.input()` for a listener that is only triggered by user input. |
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| `input` | This listener is triggered when the user changes the value of the CofoldingInput. |
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| `select` | Event listener for when the user selects or deselects the CofoldingInput. Uses event data gradio.SelectData to carry `value` referring to the label of the CofoldingInput, and `selected` to refer to state of the CofoldingInput. See EventData documentation on how to use this event data |
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| `submit` | This listener is triggered when the user presses the Enter key while the CofoldingInput is focused. |
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| `focus` | This listener is triggered when the CofoldingInput is focused. |
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| `blur` | This listener is triggered when the CofoldingInput is unfocused/blurred. |
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### User function
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The impact on the users predict function varies depending on whether the component is used as an input or output for an event (or both).
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- When used as an Input, the component only impacts the input signature of the user function.
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- When used as an output, the component only impacts the return signature of the user function.
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The code snippet below is accurate in cases where the component is used as both an input and an output.
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- **As input:** Should return, expects a {str} returned from function and sets textarea value to it.
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```python
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def predict(
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value: Unknown
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) -> dict | None:
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return value
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```
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src/backend/gradio_cofoldinginput/templates/component/index.js
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src/backend/gradio_cofoldinginput/templates/component/style.css
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The diff for this file is too large to render.
See raw diff
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src/backend/gradio_cofoldinginput/templates/example/index.js
CHANGED
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const {
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SvelteComponent: y,
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add_iframe_resize_listener: b,
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add_render_callback:
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attr:
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binding_callbacks:
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|
|
|
|
16 |
toggle_class: r
|
17 |
-
} = window.__gradio__svelte__internal, { onMount:
|
18 |
-
function
|
19 |
-
let e,
|
20 |
/*value*/
|
21 |
-
(
|
22 |
/*value*/
|
23 |
-
|
24 |
) : "") + ""
|
25 |
-
),
|
26 |
return {
|
27 |
c() {
|
28 |
-
e =
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
29 |
/*div_elementresize_handler*/
|
30 |
-
|
31 |
)), r(
|
32 |
e,
|
33 |
"table",
|
34 |
/*type*/
|
35 |
-
|
36 |
), r(
|
37 |
e,
|
38 |
"gallery",
|
39 |
/*type*/
|
40 |
-
|
41 |
), r(
|
42 |
e,
|
43 |
"selected",
|
44 |
/*selected*/
|
45 |
-
|
46 |
);
|
47 |
},
|
48 |
-
m(
|
49 |
-
|
50 |
e,
|
51 |
/*div_elementresize_handler*/
|
52 |
-
|
53 |
-
),
|
54 |
},
|
55 |
-
p(
|
56 |
-
|
57 |
-
1 &&
|
58 |
-
(
|
59 |
/*value*/
|
60 |
-
|
61 |
-
) : "") + "") &&
|
62 |
2 && r(
|
63 |
e,
|
64 |
"table",
|
65 |
/*type*/
|
66 |
-
|
67 |
-
),
|
68 |
2 && r(
|
69 |
e,
|
70 |
"gallery",
|
71 |
/*type*/
|
72 |
-
|
73 |
-
),
|
74 |
4 && r(
|
75 |
e,
|
76 |
"selected",
|
77 |
/*selected*/
|
78 |
-
|
79 |
);
|
80 |
},
|
81 |
-
i:
|
82 |
-
o:
|
83 |
-
d(
|
84 |
-
|
85 |
}
|
86 |
};
|
87 |
}
|
88 |
-
function W(
|
89 |
-
let { value:
|
90 |
-
function f(
|
91 |
-
!
|
92 |
}
|
93 |
-
|
94 |
-
f(
|
95 |
});
|
96 |
-
function
|
97 |
-
|
98 |
}
|
99 |
-
function g(
|
100 |
-
|
101 |
-
|
102 |
});
|
103 |
}
|
104 |
-
return
|
105 |
-
"value" in
|
106 |
-
}, [
|
107 |
}
|
108 |
class j extends y {
|
109 |
constructor(e) {
|
110 |
-
super(),
|
111 |
}
|
112 |
}
|
113 |
export {
|
|
|
1 |
const {
|
2 |
SvelteComponent: y,
|
3 |
add_iframe_resize_listener: b,
|
4 |
+
add_render_callback: m,
|
5 |
+
append_hydration: v,
|
6 |
+
attr: w,
|
7 |
+
binding_callbacks: z,
|
8 |
+
children: k,
|
9 |
+
claim_element: p,
|
10 |
+
claim_text: E,
|
11 |
+
detach: o,
|
12 |
+
element: S,
|
13 |
+
init: q,
|
14 |
+
insert_hydration: C,
|
15 |
+
noop: u,
|
16 |
+
safe_not_equal: D,
|
17 |
+
set_data: I,
|
18 |
+
text: M,
|
19 |
toggle_class: r
|
20 |
+
} = window.__gradio__svelte__internal, { onMount: P } = window.__gradio__svelte__internal;
|
21 |
+
function V(n) {
|
22 |
+
let e, i = (
|
23 |
/*value*/
|
24 |
+
(n[0] ? (
|
25 |
/*value*/
|
26 |
+
n[0]
|
27 |
) : "") + ""
|
28 |
+
), a, d;
|
29 |
return {
|
30 |
c() {
|
31 |
+
e = S("div"), a = M(i), this.h();
|
32 |
+
},
|
33 |
+
l(t) {
|
34 |
+
e = p(t, "DIV", { class: !0 });
|
35 |
+
var l = k(e);
|
36 |
+
a = E(l, i), l.forEach(o), this.h();
|
37 |
+
},
|
38 |
+
h() {
|
39 |
+
w(e, "class", "svelte-84cxb8"), m(() => (
|
40 |
/*div_elementresize_handler*/
|
41 |
+
n[5].call(e)
|
42 |
)), r(
|
43 |
e,
|
44 |
"table",
|
45 |
/*type*/
|
46 |
+
n[1] === "table"
|
47 |
), r(
|
48 |
e,
|
49 |
"gallery",
|
50 |
/*type*/
|
51 |
+
n[1] === "gallery"
|
52 |
), r(
|
53 |
e,
|
54 |
"selected",
|
55 |
/*selected*/
|
56 |
+
n[2]
|
57 |
);
|
58 |
},
|
59 |
+
m(t, l) {
|
60 |
+
C(t, e, l), v(e, a), d = b(
|
61 |
e,
|
62 |
/*div_elementresize_handler*/
|
63 |
+
n[5].bind(e)
|
64 |
+
), n[6](e);
|
65 |
},
|
66 |
+
p(t, [l]) {
|
67 |
+
l & /*value*/
|
68 |
+
1 && i !== (i = /*value*/
|
69 |
+
(t[0] ? (
|
70 |
/*value*/
|
71 |
+
t[0]
|
72 |
+
) : "") + "") && I(a, i), l & /*type*/
|
73 |
2 && r(
|
74 |
e,
|
75 |
"table",
|
76 |
/*type*/
|
77 |
+
t[1] === "table"
|
78 |
+
), l & /*type*/
|
79 |
2 && r(
|
80 |
e,
|
81 |
"gallery",
|
82 |
/*type*/
|
83 |
+
t[1] === "gallery"
|
84 |
+
), l & /*selected*/
|
85 |
4 && r(
|
86 |
e,
|
87 |
"selected",
|
88 |
/*selected*/
|
89 |
+
t[2]
|
90 |
);
|
91 |
},
|
92 |
+
i: u,
|
93 |
+
o: u,
|
94 |
+
d(t) {
|
95 |
+
t && o(e), d(), n[6](null);
|
96 |
}
|
97 |
};
|
98 |
}
|
99 |
+
function W(n, e, i) {
|
100 |
+
let { value: a } = e, { type: d } = e, { selected: t = !1 } = e, l, _;
|
101 |
+
function f(s, c) {
|
102 |
+
!s || !c || (_.style.setProperty("--local-text-width", `${c < 150 ? c : 200}px`), i(4, _.style.whiteSpace = "unset", _));
|
103 |
}
|
104 |
+
P(() => {
|
105 |
+
f(_, l);
|
106 |
});
|
107 |
+
function h() {
|
108 |
+
l = this.clientWidth, i(3, l);
|
109 |
}
|
110 |
+
function g(s) {
|
111 |
+
z[s ? "unshift" : "push"](() => {
|
112 |
+
_ = s, i(4, _);
|
113 |
});
|
114 |
}
|
115 |
+
return n.$$set = (s) => {
|
116 |
+
"value" in s && i(0, a = s.value), "type" in s && i(1, d = s.type), "selected" in s && i(2, t = s.selected);
|
117 |
+
}, [a, d, t, l, _, h, g];
|
118 |
}
|
119 |
class j extends y {
|
120 |
constructor(e) {
|
121 |
+
super(), q(this, e, W, V, D, { value: 0, type: 1, selected: 2 });
|
122 |
}
|
123 |
}
|
124 |
export {
|
src/frontend/package-lock.json
CHANGED
The diff for this file is too large to render.
See raw diff
|
|
src/frontend/package.json
CHANGED
@@ -9,15 +9,25 @@
|
|
9 |
"main_changeset": true,
|
10 |
"main": "Index.svelte",
|
11 |
"exports": {
|
12 |
-
".":
|
13 |
-
|
|
|
|
|
|
|
|
|
14 |
"./package.json": "./package.json"
|
15 |
},
|
16 |
"dependencies": {
|
17 |
-
"@gradio/atoms": "0.
|
18 |
-
"@gradio/icons": "0.
|
19 |
-
"@gradio/
|
20 |
-
"@gradio/
|
21 |
-
"
|
|
|
|
|
|
|
|
|
|
|
|
|
22 |
}
|
23 |
}
|
|
|
9 |
"main_changeset": true,
|
10 |
"main": "Index.svelte",
|
11 |
"exports": {
|
12 |
+
".": {
|
13 |
+
"gradio": "./Index.svelte"
|
14 |
+
},
|
15 |
+
"./example": {
|
16 |
+
"gradio": "./Example.svelte"
|
17 |
+
},
|
18 |
"./package.json": "./package.json"
|
19 |
},
|
20 |
"dependencies": {
|
21 |
+
"@gradio/atoms": "0.11.0",
|
22 |
+
"@gradio/icons": "0.8.1",
|
23 |
+
"@gradio/preview": "^0.13.0",
|
24 |
+
"@gradio/statustracker": "0.9.4",
|
25 |
+
"@gradio/utils": "0.7.0",
|
26 |
+
"3dmol": "^2.4.0"
|
27 |
+
},
|
28 |
+
"devDependencies": {
|
29 |
+
"@tsconfig/svelte": "^5.0.4",
|
30 |
+
"svelte-preprocess": "^6.0.3",
|
31 |
+
"typescript": "^5.6.3"
|
32 |
}
|
33 |
}
|
src/frontend/tsconfig.json
ADDED
@@ -0,0 +1,17 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"compilerOptions": {
|
3 |
+
"target": "esnext",
|
4 |
+
"module": "esnext",
|
5 |
+
"verbatimModuleSyntax": true,
|
6 |
+
"strict": true,
|
7 |
+
"moduleResolution": "node",
|
8 |
+
"esModuleInterop": true,
|
9 |
+
"allowSyntheticDefaultImports": true,
|
10 |
+
"skipLibCheck": true,
|
11 |
+
"resolveJsonModule": true,
|
12 |
+
"types": ["svelte"],
|
13 |
+
"baseUrl": "."
|
14 |
+
},
|
15 |
+
"include": ["src/**/*", "*.svelte"],
|
16 |
+
"exclude": ["node_modules"]
|
17 |
+
}
|
src/pyproject.toml
CHANGED
@@ -8,15 +8,15 @@ build-backend = "hatchling.build"
|
|
8 |
|
9 |
[project]
|
10 |
name = "gradio_cofoldinginput"
|
11 |
-
version = "0.0.
|
12 |
description = "Component to enter protein and DNA sequences + small molecules for cofolding"
|
13 |
readme = "README.md"
|
14 |
license = "MIT"
|
15 |
requires-python = ">=3.8"
|
16 |
-
authors = [{ name = "
|
17 |
keywords = ["gradio-custom-component", "gradio-template-Textbox"]
|
18 |
# Add dependencies here
|
19 |
-
dependencies = ["gradio>=4.0,<
|
20 |
classifiers = [
|
21 |
'Development Status :: 3 - Alpha',
|
22 |
'License :: OSI Approved :: Apache Software License',
|
|
|
8 |
|
9 |
[project]
|
10 |
name = "gradio_cofoldinginput"
|
11 |
+
version = "0.0.6"
|
12 |
description = "Component to enter protein and DNA sequences + small molecules for cofolding"
|
13 |
readme = "README.md"
|
14 |
license = "MIT"
|
15 |
requires-python = ">=3.8"
|
16 |
+
authors = [{ name = "Simon Dürr", email = "dev@simonduerr.eu" }]
|
17 |
keywords = ["gradio-custom-component", "gradio-template-Textbox"]
|
18 |
# Add dependencies here
|
19 |
+
dependencies = ["gradio>=4.0,<6.0"]
|
20 |
classifiers = [
|
21 |
'Development Status :: 3 - Alpha',
|
22 |
'License :: OSI Approved :: Apache Software License',
|