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Faezeh Sarlakifar commited on
Commit ·
42f8b52
1
Parent(s): 4745b4a
Change 'Allergen' label to 'Potential Allergen' to be more accurate
Browse files
app.py
CHANGED
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@@ -42,13 +42,12 @@ def extract_esm_embedding(sequence):
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return torch.mean(token_representations[0, 1:len(sequence)+1], dim=0).unsqueeze(0)
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-
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def classify(sequence):
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protT5_emb = extract_prott5_embedding(sequence)
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esm_emb = extract_esm_embedding(sequence)
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concat = torch.cat((esm_emb, protT5_emb), dim=1)
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pred = predict_ensemble(protT5_emb, concat, model_protT5, model_cat)
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return "Allergen" if pred.item() == 1 else "Non-Allergen"
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demo = gr.Interface(fn=classify,
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return torch.mean(token_representations[0, 1:len(sequence)+1], dim=0).unsqueeze(0)
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def classify(sequence):
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protT5_emb = extract_prott5_embedding(sequence)
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esm_emb = extract_esm_embedding(sequence)
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concat = torch.cat((esm_emb, protT5_emb), dim=1)
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pred = predict_ensemble(protT5_emb, concat, model_protT5, model_cat)
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+
return "Potential Allergen" if pred.item() == 1 else "Non-Allergen"
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demo = gr.Interface(fn=classify,
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