please again

histopath_env/histo_env.yml

@@ -1,4 +1,4 @@
-name: histopath
+name: pathagent
 channels:
   - conda-forge
   - defaults
@@ -10,7 +10,7 @@ dependencies:
       - requests
       - pandas
       - numpy
-      - pydantic>=2.0
+      - pydantic
 
       # LangChain ecosystem
       - langchain
@@ -27,6 +27,3 @@ dependencies:
       - dotenv
       # LazySlide (histopathology toolkit)
       - lazyslide
-      - histolab
-      - biolearn
-      - pyaging

raw_freeze.txt

@@ -1,203 +1,155 @@
-aiobotocore==2.24.1
+aiobotocore==2.25.0
 aiofiles==24.1.0
 aiohappyeyeballs==2.6.1
-aiohttp==3.12.15
+aiohttp==3.13.1
 aioitertools==0.12.0
 aiosignal==1.4.0
 anndata==0.12.2
+annotated-doc==0.0.3
 annotated-types==0.7.0
-anthropic==0.64.0
-anyio==4.10.0
-appdirs==1.4.4
+anthropic==0.71.0
+anyio==4.11.0
 array-api-compat==1.12.0
 asciitree==0.3.3
-asttokens==3.0.0
 attrs==25.3.0
-beautifulsoup4==4.13.5
-biolearn==0.8.1
-botocore==1.39.11
+botocore==1.40.49
 Brotli==1.1.0
-cachetools==5.5.2
-certifi==2025.8.3
-cffi==2.0.0
-charset-normalizer==3.4.3
-clarabel==0.11.1
+certifi==2025.10.5
+charset-normalizer==3.4.4
 click==8.2.1
 cloudpickle==3.1.1
 colorcet==3.1.0
-comm==0.2.3
-contourpy==1.3.2
-cvxpy==1.6.0
+contourpy==1.3.3
 cycler==0.12.1
 cyclopts==3.23.0
 dask==2024.11.2
 dask-expr==1.1.19
 dask-image==2024.5.3
 datashader==0.18.2
-debugpy==1.8.17
-decorator==5.2.1
 Deprecated==1.2.18
 distro==1.9.0
 docstring_parser==0.17.0
-docutils==0.22
+docutils==0.22.2
 dotenv==0.9.9
-ecos==2.0.14
-einops==0.8.0
-environs==11.0.0
-et_xmlfile==2.0.0
-executing==2.2.1
-fastapi==0.116.1
+fastapi==0.120.0
 fasteners==0.20
-ffmpy==0.6.1
-filelock==3.19.1
-fonttools==4.59.1
-frozenlist==1.7.0
-fsspec==2025.7.0
+ffmpy==0.6.4
+filelock==3.20.0
+fonttools==4.60.1
+frozenlist==1.8.0
+fsspec==2025.9.0
 geopandas==1.1.1
-google==3.0.0
-google-auth==2.40.3
-google-genai==1.38.0
-gradio==5.44.0
-gradio_client==1.12.1
-greenlet==3.2.4
+gradio==5.49.1
+gradio_client==1.13.3
 groovy==0.1.2
 h11==0.16.0
-h5py==3.14.0
-hf-xet==1.1.8
-histolab==0.7.0
+h5py==3.15.1
+hf-xet==1.2.0
 httpcore==1.0.9
 httpx==0.28.1
-huggingface-hub==0.34.4
-idna==3.10
+huggingface-hub==0.36.0
+idna==3.11
 imagecodecs==2025.8.2
 imageio==2.37.0
 importlib_metadata==8.7.0
-ipykernel==7.0.1
-ipython==9.6.0
-ipython_pygments_lexers==1.1.1
-jedi==0.19.2
 Jinja2==3.1.6
 jiter==0.10.0
 jmespath==1.0.1
-joblib==1.5.1
+joblib==1.5.2
 jsonpatch==1.33
 jsonpointer==3.0.0
-jupyter_client==8.6.3
-jupyter_core==5.9.1
 kiwisolver==1.4.9
-langchain==0.3.27
-langchain-anthropic==0.3.19
-langchain-core==0.3.75
-langchain-huggingface==0.3.1
-langchain-ollama==0.3.7
-langchain-openai==0.3.32
+langchain==1.0.2
+langchain-anthropic==1.0.0
+langchain-core==1.0.1
+langchain-huggingface==1.0.0
+langchain-ollama==1.0.0
+langchain-openai==1.0.1
 langchain-text-splitters==0.3.9
-langgraph==0.6.6
+langgraph==1.0.1
 langgraph-checkpoint==2.1.1
-langgraph-prebuilt==0.6.4
+langgraph-prebuilt==1.0.1
 langgraph-sdk==0.2.3
 langsmith==0.4.18
 lazy_loader==0.4
-lazyslide==0.8.1
+lazyslide==0.9.2
 legacy-api-wrap==1.4.1
 legendkit==0.3.6
 llvmlite==0.44.0
 locket==1.0.0
 markdown-it-py==4.0.0
-MarkupSafe==3.0.2
-marshmallow==4.0.1
+MarkupSafe==3.0.3
 matplotlib==3.10.5
-matplotlib-inline==0.1.7
 matplotlib-scalebar==0.9.0
 mdurl==0.1.2
 mpmath==1.3.0
-multidict==6.6.4
+multidict==6.7.0
 multipledispatch==1.0.0
 multiscale_spatial_image==2.0.3
 natsort==8.4.0
-nest-asyncio==1.6.0
 networkx==3.5
-nltk==3.9.1
 numba==0.61.2
 numcodecs==0.15.1
-numpy==1.24.4
-nvidia-cublas-cu12==12.6.4.1
-nvidia-cuda-cupti-cu12==12.6.80
-nvidia-cuda-nvrtc-cu12==12.6.77
-nvidia-cuda-runtime-cu12==12.6.77
-nvidia-cudnn-cu12==9.5.1.17
-nvidia-cufft-cu12==11.3.0.4
-nvidia-cufile-cu12==1.11.1.6
-nvidia-curand-cu12==10.3.7.77
-nvidia-cusolver-cu12==11.7.1.2
-nvidia-cusparse-cu12==12.5.4.2
-nvidia-cusparselt-cu12==0.6.3
-nvidia-nccl-cu12==2.26.2
-nvidia-nvjitlink-cu12==12.6.85
-nvidia-nvtx-cu12==12.6.77
-ollama==0.5.3
+numpy==2.2.6
+nvidia-cublas-cu12==12.8.4.1
+nvidia-cuda-cupti-cu12==12.8.90
+nvidia-cuda-nvrtc-cu12==12.8.93
+nvidia-cuda-runtime-cu12==12.8.90
+nvidia-cudnn-cu12==9.10.2.21
+nvidia-cufft-cu12==11.3.3.83
+nvidia-cufile-cu12==1.13.1.3
+nvidia-curand-cu12==10.3.9.90
+nvidia-cusolver-cu12==11.7.3.90
+nvidia-cusparse-cu12==12.5.8.93
+nvidia-cusparselt-cu12==0.7.1
+nvidia-nccl-cu12==2.27.5
+nvidia-nvjitlink-cu12==12.8.93
+nvidia-nvshmem-cu12==3.3.20
+nvidia-nvtx-cu12==12.8.90
+ollama==0.6.0
 ome-zarr==0.11.1
-openai==1.102.0
+openai==2.6.1
 opencv-python-headless==4.11.0.86
-openpyxl==3.1.5
 openslide-bin==4.0.0.8
 openslide-python==1.4.2
 orjson==3.11.3
 ormsgpack==1.10.0
-osqp==1.0.5
 packaging==25.0
-pandas==2.3.2
+pandas==2.3.3
 param==2.2.1
-parso==0.8.5
 partd==1.4.2
-pexpect==4.9.0
-pillow==10.4.0
+pillow==11.3.0
 PIMS==0.7
-platformdirs==4.4.0
+platformdirs==4.5.0
 pooch==1.8.2
-prompt_toolkit==3.0.52
-propcache==0.3.2
-protobuf==6.32.1
-psutil==7.0.0
-ptyprocess==0.7.0
-PubChemPy==1.0.5
-pure_eval==0.2.3
-pyaging==0.1.27
+propcache==0.4.1
+psutil==7.1.2
 pyarrow==21.0.0
-pyasn1==0.6.1
-pyasn1_modules==0.4.2
-pycparser==2.23
-pyct==0.5.0
-pydantic==2.11.7
+pyct==0.6.0
+pydantic==2.11.10
 pydantic_core==2.33.2
 pydub==0.25.1
 Pygments==2.19.2
 pyogrio==0.11.1
-pyparsing==3.2.3
+pyparsing==3.2.5
 pyproj==3.7.2
-python-dateutil==2.9.0
-python-dotenv==1.1.1
+python-dateutil==2.9.0.post0
+python-dotenv==1.2.1
 python-multipart==0.0.20
 pytz==2025.2
-PyWavelets==1.8.0
-PyYAML==6.0.2
-pyzmq==27.1.0
-rdkit==2025.9.1
-regex==2025.7.34
+PyYAML==6.0.3
+regex==2025.10.23
 requests==2.32.5
 requests-toolbelt==1.0.0
 rich==14.1.0
 rich-rst==1.3.1
-rsa==4.9.1
-ruff==0.12.10
-s3fs==2025.7.0
-sacremoses==0.1.1
-safehttpx==0.1.6
+ruff==0.14.2
+s3fs==2025.9.0
+safehttpx==0.1.7
 safetensors==0.6.2
-scikit-image==0.19.3
-scikit-learn==1.7.1
-scipy==1.16.1
-scs==3.2.9
+scikit-image==0.25.2
+scikit-learn==1.7.2
+scipy==1.16.2
 seaborn==0.13.2
 semantic-version==2.10.0
 shapely==2.1.1
@@ -205,12 +157,9 @@ shellingham==1.5.4
 six==1.17.0
 slicerator==1.1.0
 sniffio==1.3.1
-soupsieve==2.8
 spatial_image==1.2.3
 spatialdata==0.5.0
-SQLAlchemy==2.0.43
-stack-data==0.6.3
-starlette==0.47.3
+starlette==0.48.0
 sympy==1.14.0
 tenacity==9.1.2
 threadpoolctl==3.6.0
@@ -218,23 +167,19 @@ tifffile==2025.5.10
 tiffslide==2.5.1
 tiktoken==0.11.0
 timm==1.0.19
-tokenizers==0.21.4
+tokenizers==0.22.1
 tomlkit==0.13.3
-toolz==1.0.0
-torch==2.7.1
-torchvision==0.23.0
-tornado==6.5.2
+toolz==1.1.0
+torch==2.9.0
+torchvision==0.24.0
 tqdm==4.67.1
-traitlets==5.14.3
-transformers==4.53.3
-triton==3.3.1
-typer==0.16.1
-typing-inspection==0.4.1
+triton==3.5.0
+typer==0.20.0
+typing-inspection==0.4.2
 typing_extensions==4.15.0
 tzdata==2025.2
 urllib3==2.5.0
-uvicorn==0.35.0
-wcwidth==0.2.14
+uvicorn==0.38.0
 websockets==15.0.1
 wrapt==1.17.3
 wsidata==0.7.1
@@ -242,10 +187,8 @@ xarray==2025.8.0
 xarray-dataclass==3.0.0
 xarray-schema==0.0.3
 xarray-spatial==0.4.0
-xformers==0.0.31
-xlrd==2.0.2
 xxhash==3.5.0
-yarl==1.20.1
+yarl==1.22.0
 zarr==2.18.7
 zipp==3.23.0
 zstandard==0.24.0

requirements.txt

@@ -4,204 +4,155 @@
 Brotli==1.1.0
 Deprecated==1.2.18
 Jinja2==3.1.6
-MarkupSafe==3.0.2
+MarkupSafe==3.0.3
 PIMS==0.7
-PubChemPy==1.0.5
-PyWavelets==1.8.0
-PyYAML==6.0.2
+PyYAML==6.0.3
 Pygments==2.19.2
-SQLAlchemy==2.0.43
-aiobotocore==2.24.1
+aiobotocore==2.25.0
 aiofiles==24.1.0
 aiohappyeyeballs==2.6.1
-aiohttp==3.12.15
+aiohttp==3.13.1
 aioitertools==0.12.0
 aiosignal==1.4.0
 anndata==0.12.2
+annotated-doc==0.0.3
 annotated-types==0.7.0
-anthropic==0.64.0
-anyio==4.10.0
-appdirs==1.4.4
+anthropic==0.71.0
+anyio==4.11.0
 array-api-compat==1.12.0
 asciitree==0.3.3
-asttokens==3.0.0
 attrs==25.3.0
-beautifulsoup4==4.13.5
-biolearn==0.8.1
-botocore==1.39.11
-cachetools==5.5.2
-certifi==2025.8.3
-cffi==2.0.0
-charset-normalizer==3.4.3
-clarabel==0.11.1
+botocore==1.40.49
+certifi==2025.10.5
+charset-normalizer==3.4.4
 click==8.2.1
 cloudpickle==3.1.1
 colorcet==3.1.0
-comm==0.2.3
-contourpy==1.3.2
-cvxpy==1.6.0
+contourpy==1.3.3
 cycler==0.12.1
 cyclopts==3.23.0
 dask-expr==1.1.19
 dask-image==2024.5.3
 dask==2024.11.2
 datashader==0.18.2
-debugpy==1.8.17
-decorator==5.2.1
 distro==1.9.0
 docstring_parser==0.17.0
-docutils==0.22
+docutils==0.22.2
 dotenv==0.9.9
-ecos==2.0.14
-einops==0.8.0
-environs==11.0.0
-et_xmlfile==2.0.0
-executing==2.2.1
-fastapi==0.116.1
+fastapi==0.120.0
 fasteners==0.20
-ffmpy==0.6.1
-filelock==3.19.1
-fonttools==4.59.1
-frozenlist==1.7.0
-fsspec==2025.7.0
+ffmpy==0.6.4
+filelock==3.20.0
+fonttools==4.60.1
+frozenlist==1.8.0
+fsspec==2025.9.0
 geopandas==1.1.1
-google-auth==2.40.3
-google-genai==1.38.0
-google==3.0.0
-gradio==5.44.0
-gradio_client==1.12.1
-greenlet==3.2.4
+gradio==5.49.1
+gradio_client==1.13.3
 groovy==0.1.2
 h11==0.16.0
-h5py==3.14.0
-hf-xet==1.1.8
-histolab==0.7.0
+h5py==3.15.1
+hf-xet==1.2.0
 httpcore==1.0.9
 httpx==0.28.1
-huggingface-hub==0.34.4
-idna==3.10
+huggingface-hub==0.36.0
+idna==3.11
 imagecodecs==2025.8.2
 imageio==2.37.0
 importlib_metadata==8.7.0
-ipykernel==7.0.1
-ipython==9.6.0
-ipython_pygments_lexers==1.1.1
-jedi==0.19.2
 jiter==0.10.0
 jmespath==1.0.1
-joblib==1.5.1
+joblib==1.5.2
 jsonpatch==1.33
 jsonpointer==3.0.0
-jupyter_client==8.6.3
-jupyter_core==5.9.1
 kiwisolver==1.4.9
-langchain-anthropic==0.3.19
-langchain-core==0.3.75
-langchain-huggingface==0.3.1
-langchain-ollama==0.3.7
-langchain-openai==0.3.32
+langchain-anthropic==1.0.0
+langchain-core==1.0.1
+langchain-huggingface==1.0.0
+langchain-ollama==1.0.0
+langchain-openai==1.0.1
 langchain-text-splitters==0.3.9
-langchain==0.3.27
+langchain==1.0.2
 langgraph-checkpoint==2.1.1
-langgraph-prebuilt==0.6.4
+langgraph-prebuilt==1.0.1
 langgraph-sdk==0.2.3
-langgraph==0.6.6
+langgraph==1.0.1
 langsmith==0.4.18
 lazy_loader==0.4
-lazyslide==0.8.1
+lazyslide==0.9.2
 legacy-api-wrap==1.4.1
 legendkit==0.3.6
 llvmlite==0.44.0
 locket==1.0.0
 markdown-it-py==4.0.0
-marshmallow==4.0.1
-matplotlib-inline==0.1.7
 matplotlib-scalebar==0.9.0
 matplotlib==3.10.5
 mdurl==0.1.2
 mpmath==1.3.0
-multidict==6.6.4
+multidict==6.7.0
 multipledispatch==1.0.0
 multiscale_spatial_image==2.0.3
 natsort==8.4.0
-nest-asyncio==1.6.0
 networkx==3.5
-nltk==3.9.1
 numba==0.61.2
 numcodecs==0.15.1
-numpy==1.24.4
-nvidia-cublas-cu12==12.6.4.1
-nvidia-cuda-cupti-cu12==12.6.80
-nvidia-cuda-nvrtc-cu12==12.6.77
-nvidia-cuda-runtime-cu12==12.6.77
-nvidia-cudnn-cu12==9.5.1.17
-nvidia-cufft-cu12==11.3.0.4
-nvidia-cufile-cu12==1.11.1.6
-nvidia-curand-cu12==10.3.7.77
-nvidia-cusolver-cu12==11.7.1.2
-nvidia-cusparse-cu12==12.5.4.2
-nvidia-cusparselt-cu12==0.6.3
-nvidia-nccl-cu12==2.26.2
-nvidia-nvjitlink-cu12==12.6.85
-nvidia-nvtx-cu12==12.6.77
-ollama==0.5.3
+numpy==2.2.6
+nvidia-cublas-cu12==12.8.4.1
+nvidia-cuda-cupti-cu12==12.8.90
+nvidia-cuda-nvrtc-cu12==12.8.93
+nvidia-cuda-runtime-cu12==12.8.90
+nvidia-cudnn-cu12==9.10.2.21
+nvidia-cufft-cu12==11.3.3.83
+nvidia-cufile-cu12==1.13.1.3
+nvidia-curand-cu12==10.3.9.90
+nvidia-cusolver-cu12==11.7.3.90
+nvidia-cusparse-cu12==12.5.8.93
+nvidia-cusparselt-cu12==0.7.1
+nvidia-nccl-cu12==2.27.5
+nvidia-nvjitlink-cu12==12.8.93
+nvidia-nvshmem-cu12==3.3.20
+nvidia-nvtx-cu12==12.8.90
+ollama==0.6.0
 ome-zarr==0.11.1
-openai==1.102.0
+openai==2.6.1
 opencv-python-headless==4.11.0.86
-openpyxl==3.1.5
 openslide-bin==4.0.0.8
 openslide-python==1.4.2
 orjson==3.11.3
 ormsgpack==1.10.0
-osqp==1.0.5
 packaging==25.0
-pandas==2.3.2
+pandas==2.3.3
 param==2.2.1
-parso==0.8.5
 partd==1.4.2
-pexpect==4.9.0
-pillow==10.4.0
-platformdirs==4.4.0
+pillow==11.3.0
+platformdirs==4.5.0
 pooch==1.8.2
-prompt_toolkit==3.0.52
-propcache==0.3.2
-protobuf==6.32.1
-psutil==7.0.0
-ptyprocess==0.7.0
-pure_eval==0.2.3
-pyaging==0.1.27
+propcache==0.4.1
+psutil==7.1.2
 pyarrow==21.0.0
-pyasn1==0.6.1
-pyasn1_modules==0.4.2
-pycparser==2.23
-pyct==0.5.0
-pydantic==2.11.7
+pyct==0.6.0
+pydantic==2.11.10
 pydantic_core==2.33.2
 pydub==0.25.1
 pyogrio==0.11.1
-pyparsing==3.2.3
+pyparsing==3.2.5
 pyproj==3.7.2
-python-dateutil==2.9.0
-python-dotenv==1.1.1
+python-dateutil==2.9.0.post0
+python-dotenv==1.2.1
 python-multipart==0.0.20
 pytz==2025.2
-pyzmq==27.1.0
-rdkit==2025.9.1
-regex==2025.7.34
+regex==2025.10.23
 requests-toolbelt==1.0.0
 requests==2.32.5
 rich-rst==1.3.1
 rich==14.1.0
-rsa==4.9.1
-ruff==0.12.10
-s3fs==2025.7.0
-sacremoses==0.1.1
-safehttpx==0.1.6
+ruff==0.14.2
+s3fs==2025.9.0
+safehttpx==0.1.7
 safetensors==0.6.2
-scikit-image==0.19.3
-scikit-learn==1.7.1
-scipy==1.16.1
-scs==3.2.9
+scikit-image==0.25.2
+scikit-learn==1.7.2
+scipy==1.16.2
 seaborn==0.13.2
 semantic-version==2.10.0
 shapely==2.1.1
@@ -209,11 +160,9 @@ shellingham==1.5.4
 six==1.17.0
 slicerator==1.1.0
 sniffio==1.3.1
-soupsieve==2.8
 spatial_image==1.2.3
 spatialdata==0.5.0
-stack-data==0.6.3
-starlette==0.47.3
+starlette==0.48.0
 sympy==1.14.0
 tenacity==9.1.2
 threadpoolctl==3.6.0
@@ -221,23 +170,19 @@ tifffile==2025.5.10
 tiffslide==2.5.1
 tiktoken==0.11.0
 timm==1.0.19
-tokenizers==0.21.4
+tokenizers==0.22.1
 tomlkit==0.13.3
-toolz==1.0.0
-torch==2.7.1
-torchvision==0.23.0
-tornado==6.5.2
+toolz==1.1.0
+torch==2.9.0
+torchvision==0.24.0
 tqdm==4.67.1
-traitlets==5.14.3
-transformers==4.53.3
-triton==3.3.1
-typer==0.16.1
-typing-inspection==0.4.1
+triton==3.5.0
+typer==0.20.0
+typing-inspection==0.4.2
 typing_extensions==4.15.0
 tzdata==2025.2
 urllib3==2.5.0
-uvicorn==0.35.0
-wcwidth==0.2.14
+uvicorn==0.38.0
 websockets==15.0.1
 wrapt==1.17.3
 wsidata==0.7.1
@@ -245,10 +190,8 @@ xarray-dataclass==3.0.0
 xarray-schema==0.0.3
 xarray-spatial==0.4.0
 xarray==2025.8.0
-xformers==0.0.31
-xlrd==2.0.2
 xxhash==3.5.0
-yarl==1.20.1
+yarl==1.22.0
 zarr==2.18.7
 zipp==3.23.0
 zstandard==0.24.0

t.txt

@@ -1,130 +0,0 @@
-# # Core dependencies
-# requests
-# pandas
-# numpy
-# pydantic
-
-# # Gradio - CRITICAL FIX: was 4.4.1 (typo), should be 4.44.1
-# gradio
-
-# # LangChain ecosystem
-# langchain-core
-# langchain-openai
-# langchain-anthropic
-# langgraph
-
-# # LLM API SDKs
-# openai
-# anthropic
-# python-dotenv
-
-# # Pin problematic dependencies BEFORE lazyslide to avoid backtracking
-# # xarray==2024.10.0
-# # shapely==2.0.6
-# # scipy==1.11.4
-# # numba==0.60.0
-# # dask==2024.11.2
-# scipy
-# shapely
-
-# # ML/Vision dependencies
-# torch
-# torchvision
-# timm
-# transformers
-# huggingface-hub
-# Pillow
-
-# # LazySlide - now should install quickly with pinned deps above
-# lazyslide
-
-# # PRISM dependencies
-# python-environ
-# protobuf
-# sacremoses
-
-# # Whole slide image support
-# # openslide-python
-
-# # Additional tools (optional - comment out if build still times out)
-# scikit-image
-# opencv-python-headless
-# matplotlib
-# EXACT VERSION PINS - Builds in <5 minutes on HF Spaces
-# These versions are known to work together
-
-# ============================================
-# CORE (Required)
-# ============================================
-gradio==5.7.0
-python-dotenv==1.0.0
-requests==2.32.3
-
-# ============================================
-# DATA (Minimal)
-# ============================================
-numpy==1.26.4
-pandas==2.2.2
-Pillow==11.0.0
-
-# ============================================
-# LLM APIs
-# ============================================
-anthropic==0.71.0
-pydantic==2.9.2
-
-# ============================================
-# LANGCHAIN (Core only)
-# ============================================
-langchain-core==0.3.28
-langchain-anthropic==0.3.6
-
-# ============================================
-# LAZYSLIDE DEPENDENCY STACK - ALL PRE-PINNED
-# This section ensures pip doesn't backtrack
-# ============================================
-
-# First layer - base numerical libs
-llvmlite==0.43.0
-numba==0.60.0
-scipy==1.13.1
-
-# Second layer - spatial/geo
-shapely==2.0.6
-pyproj==3.6.1
-
-# Third layer - data processing
-toolz==0.12.1
-cloudpickle==3.0.0
-partd==1.4.1
-dask==2024.5.0
-fsspec==2024.3.1
-
-# Fourth layer - array/dataframe
-xarray==2024.3.0
-
-# Fifth layer - geospatial
-geopandas==0.14.4
-
-# Sixth layer - imaging
-tifffile==2024.8.30
-zarr==2.18.3
-
-# Finally - lazyslide (should install quickly now)
-lazyslide==0.9.2
-
-# ============================================
-# OPTIONAL - Comment out if not needed
-# ============================================
-# transformers==4.46.0
-# huggingface-hub==0.26.3
-
-# ============================================
-# DO NOT ADD - These cause resolution issues:
-# ============================================
-# torch  # Too heavy for free tier, causes OOM
-# torchvision
-# timm
-# opencv-python-headless
-# scikit-image
-# matplotlib