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Browse files- Dockerfile +29 -18
Dockerfile
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@@ -1,14 +1,20 @@
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FROM python:3.11-slim
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RUN apt-get update && apt-get install -y --no-install-recommends \
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build-essential \
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gfortran \
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r-base \
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r-base-dev \
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libcurl4-openssl-dev \
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libssl-dev \
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libxml2-dev \
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@@ -16,21 +22,26 @@ RUN apt-get update && apt-get install -y --no-install-recommends \
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liblapack-dev \
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&& rm -rf /var/lib/apt/lists/*
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#
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# Set CRAN mirror explicitly + install packages
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RUN R -e "options(repos=c(CRAN='https://cloud.r-project.org')); install.packages(c('jsonlite','Matrix','pROC','glmnet'), Ncpus=max(1, parallel::detectCores()-1))"
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# ---- IRkernel (so papermill can run the R notebook kernel 'ir') ----
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RUN R -e "options(repos=c(CRAN='https://cloud.r-project.org')); install.packages('IRkernel'); IRkernel::installspec(user = FALSE)"
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# ---- Python deps ----
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WORKDIR /app
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COPY requirements.txt /app/requirements.txt
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RUN pip install --no-cache-dir -r /app/requirements.txt
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RUN pip install --no-cache-dir jupyter ipykernel
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# ---- Copy project files ----
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COPY . /app
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EXPOSE 7860
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CMD ["python", "app.py"]
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FROM python:3.10-slim
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ENV DEBIAN_FRONTEND=noninteractive
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ENV PYTHONDONTWRITEBYTECODE=1
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ENV PYTHONUNBUFFERED=1
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ENV GRADIO_SERVER_NAME=0.0.0.0
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ENV GRADIO_SERVER_PORT=7860
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# System deps: R + compilers + common R pkg build deps (+ BLAS/LAPACK for glmnet)
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RUN apt-get update && apt-get install -y --no-install-recommends \
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r-base \
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r-base-dev \
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build-essential \
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gfortran \
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curl \
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git \
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libcurl4-openssl-dev \
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libssl-dev \
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libxml2-dev \
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liblapack-dev \
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&& rm -rf /var/lib/apt/lists/*
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# Install required R packages (include glmnet + pROC + Matrix)
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RUN R -e "options(repos=c(CRAN='https://cloud.r-project.org')); install.packages(c('jsonlite','Matrix','pROC','glmnet'), Ncpus=max(1, parallel::detectCores()-1))"
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WORKDIR /app
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COPY . /app
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# Python deps (from requirements.txt)
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RUN pip install --no-cache-dir -r requirements.txt
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# Notebook execution deps
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RUN pip install --no-cache-dir notebook ipykernel papermill
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# Optional: only keep these if you truly need them (you probably don't)
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# RUN pip install --no-cache-dir textblob faker transformers
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RUN python -m ipykernel install --user --name python3 --display-name "Python 3"
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# R deps for notebook execution via papermill (IRkernel)
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RUN R -e "options(repos=c(CRAN='https://cloud.r-project.org')); install.packages('IRkernel')"
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RUN R -e "IRkernel::installspec(user = FALSE)"
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EXPOSE 7860
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CMD ["python", "app.py"]
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