ArnoChen
commited on
Commit
·
dc3571b
1
Parent(s):
316c28a
use KnowledgeGraph typed dict for graph API response
Browse files- lightrag/api/lightrag_server.py +2 -2
- lightrag/base.py +2 -1
- lightrag/kg/neo4j_impl.py +28 -25
- lightrag/lightrag.py +2 -1
- lightrag/types.py +20 -1
lightrag/api/lightrag_server.py
CHANGED
|
@@ -1424,8 +1424,8 @@ def create_app(args):
|
|
| 1424 |
|
| 1425 |
# query all graph
|
| 1426 |
@app.get("/graphs")
|
| 1427 |
-
async def
|
| 1428 |
-
return await rag.
|
| 1429 |
|
| 1430 |
# Add Ollama API routes
|
| 1431 |
ollama_api = OllamaAPI(rag)
|
|
|
|
| 1424 |
|
| 1425 |
# query all graph
|
| 1426 |
@app.get("/graphs")
|
| 1427 |
+
async def get_knowledge_graph(label: str):
|
| 1428 |
+
return await rag.get_knowledge_graph(nodel_label=label, max_depth=100)
|
| 1429 |
|
| 1430 |
# Add Ollama API routes
|
| 1431 |
ollama_api = OllamaAPI(rag)
|
lightrag/base.py
CHANGED
|
@@ -13,6 +13,7 @@ from typing import (
|
|
| 13 |
import numpy as np
|
| 14 |
|
| 15 |
from .utils import EmbeddingFunc
|
|
|
|
| 16 |
|
| 17 |
|
| 18 |
class TextChunkSchema(TypedDict):
|
|
@@ -175,7 +176,7 @@ class BaseGraphStorage(StorageNameSpace):
|
|
| 175 |
|
| 176 |
async def get_knowledge_graph(
|
| 177 |
self, node_label: str, max_depth: int = 5
|
| 178 |
-
) ->
|
| 179 |
raise NotImplementedError
|
| 180 |
|
| 181 |
|
|
|
|
| 13 |
import numpy as np
|
| 14 |
|
| 15 |
from .utils import EmbeddingFunc
|
| 16 |
+
from .types import KnowledgeGraph
|
| 17 |
|
| 18 |
|
| 19 |
class TextChunkSchema(TypedDict):
|
|
|
|
| 176 |
|
| 177 |
async def get_knowledge_graph(
|
| 178 |
self, node_label: str, max_depth: int = 5
|
| 179 |
+
) -> KnowledgeGraph:
|
| 180 |
raise NotImplementedError
|
| 181 |
|
| 182 |
|
lightrag/kg/neo4j_impl.py
CHANGED
|
@@ -25,6 +25,7 @@ from tenacity import (
|
|
| 25 |
|
| 26 |
from ..utils import logger
|
| 27 |
from ..base import BaseGraphStorage
|
|
|
|
| 28 |
|
| 29 |
|
| 30 |
@dataclass
|
|
@@ -44,7 +45,8 @@ class Neo4JStorage(BaseGraphStorage):
|
|
| 44 |
URI = os.environ["NEO4J_URI"]
|
| 45 |
USERNAME = os.environ["NEO4J_USERNAME"]
|
| 46 |
PASSWORD = os.environ["NEO4J_PASSWORD"]
|
| 47 |
-
MAX_CONNECTION_POOL_SIZE = os.environ.get(
|
|
|
|
| 48 |
DATABASE = os.environ.get(
|
| 49 |
"NEO4J_DATABASE", re.sub(r"[^a-zA-Z0-9-]", "-", namespace)
|
| 50 |
)
|
|
@@ -74,19 +76,22 @@ class Neo4JStorage(BaseGraphStorage):
|
|
| 74 |
)
|
| 75 |
raise e
|
| 76 |
except neo4jExceptions.AuthError as e:
|
| 77 |
-
logger.error(
|
|
|
|
| 78 |
raise e
|
| 79 |
except neo4jExceptions.ClientError as e:
|
| 80 |
if e.code == "Neo.ClientError.Database.DatabaseNotFound":
|
| 81 |
logger.info(
|
| 82 |
-
f"{database} at {URI} not found. Try to create specified database.".capitalize(
|
|
|
|
| 83 |
)
|
| 84 |
try:
|
| 85 |
with _sync_driver.session() as session:
|
| 86 |
session.run(
|
| 87 |
f"CREATE DATABASE `{database}` IF NOT EXISTS"
|
| 88 |
)
|
| 89 |
-
logger.info(
|
|
|
|
| 90 |
connected = True
|
| 91 |
except (
|
| 92 |
neo4jExceptions.ClientError,
|
|
@@ -103,7 +108,8 @@ class Neo4JStorage(BaseGraphStorage):
|
|
| 103 |
"This Neo4j instance does not support creating databases. Try to use Neo4j Desktop/Enterprise version or DozerDB instead. Fallback to use the default database."
|
| 104 |
)
|
| 105 |
if database is None:
|
| 106 |
-
logger.error(
|
|
|
|
| 107 |
raise e
|
| 108 |
|
| 109 |
if connected:
|
|
@@ -365,7 +371,7 @@ class Neo4JStorage(BaseGraphStorage):
|
|
| 365 |
|
| 366 |
async def get_knowledge_graph(
|
| 367 |
self, node_label: str, max_depth: int = 5
|
| 368 |
-
) ->
|
| 369 |
"""
|
| 370 |
Get complete connected subgraph for specified node (including the starting node itself)
|
| 371 |
|
|
@@ -376,7 +382,7 @@ class Neo4JStorage(BaseGraphStorage):
|
|
| 376 |
4. Add depth control
|
| 377 |
"""
|
| 378 |
label = node_label.strip('"')
|
| 379 |
-
result =
|
| 380 |
seen_nodes = set()
|
| 381 |
seen_edges = set()
|
| 382 |
|
|
@@ -395,7 +401,8 @@ class Neo4JStorage(BaseGraphStorage):
|
|
| 395 |
validate_query = f"MATCH (n:`{label}`) RETURN n LIMIT 1"
|
| 396 |
validate_result = await session.run(validate_query)
|
| 397 |
if not await validate_result.single():
|
| 398 |
-
logger.warning(
|
|
|
|
| 399 |
return result
|
| 400 |
|
| 401 |
# Optimized query (including direction handling and self-loops)
|
|
@@ -420,11 +427,11 @@ class Neo4JStorage(BaseGraphStorage):
|
|
| 420 |
# Use node ID + label combination as unique identifier
|
| 421 |
node_id = node.id
|
| 422 |
if node_id not in seen_nodes:
|
| 423 |
-
|
| 424 |
-
|
| 425 |
-
|
| 426 |
-
|
| 427 |
-
|
| 428 |
seen_nodes.add(node_id)
|
| 429 |
|
| 430 |
# Handle relationships (including direction information)
|
|
@@ -433,21 +440,17 @@ class Neo4JStorage(BaseGraphStorage):
|
|
| 433 |
if edge_id not in seen_edges:
|
| 434 |
start = rel.start_node
|
| 435 |
end = rel.end_node
|
| 436 |
-
|
| 437 |
-
|
| 438 |
-
|
| 439 |
-
|
| 440 |
-
|
| 441 |
-
|
| 442 |
-
|
| 443 |
-
"properties": dict(rel),
|
| 444 |
-
}
|
| 445 |
-
)
|
| 446 |
-
result["edges"].append(edge_data)
|
| 447 |
seen_edges.add(edge_id)
|
| 448 |
|
| 449 |
logger.info(
|
| 450 |
-
f"Subgraph query successful | Node count: {len(result
|
| 451 |
)
|
| 452 |
|
| 453 |
except neo4jExceptions.ClientError as e:
|
|
|
|
| 25 |
|
| 26 |
from ..utils import logger
|
| 27 |
from ..base import BaseGraphStorage
|
| 28 |
+
from ..types import KnowledgeGraph, KnowledgeGraphNode, KnowledgeGraphEdge
|
| 29 |
|
| 30 |
|
| 31 |
@dataclass
|
|
|
|
| 45 |
URI = os.environ["NEO4J_URI"]
|
| 46 |
USERNAME = os.environ["NEO4J_USERNAME"]
|
| 47 |
PASSWORD = os.environ["NEO4J_PASSWORD"]
|
| 48 |
+
MAX_CONNECTION_POOL_SIZE = os.environ.get(
|
| 49 |
+
"NEO4J_MAX_CONNECTION_POOL_SIZE", 800)
|
| 50 |
DATABASE = os.environ.get(
|
| 51 |
"NEO4J_DATABASE", re.sub(r"[^a-zA-Z0-9-]", "-", namespace)
|
| 52 |
)
|
|
|
|
| 76 |
)
|
| 77 |
raise e
|
| 78 |
except neo4jExceptions.AuthError as e:
|
| 79 |
+
logger.error(
|
| 80 |
+
f"Authentication failed for {database} at {URI}")
|
| 81 |
raise e
|
| 82 |
except neo4jExceptions.ClientError as e:
|
| 83 |
if e.code == "Neo.ClientError.Database.DatabaseNotFound":
|
| 84 |
logger.info(
|
| 85 |
+
f"{database} at {URI} not found. Try to create specified database.".capitalize(
|
| 86 |
+
)
|
| 87 |
)
|
| 88 |
try:
|
| 89 |
with _sync_driver.session() as session:
|
| 90 |
session.run(
|
| 91 |
f"CREATE DATABASE `{database}` IF NOT EXISTS"
|
| 92 |
)
|
| 93 |
+
logger.info(
|
| 94 |
+
f"{database} at {URI} created".capitalize())
|
| 95 |
connected = True
|
| 96 |
except (
|
| 97 |
neo4jExceptions.ClientError,
|
|
|
|
| 108 |
"This Neo4j instance does not support creating databases. Try to use Neo4j Desktop/Enterprise version or DozerDB instead. Fallback to use the default database."
|
| 109 |
)
|
| 110 |
if database is None:
|
| 111 |
+
logger.error(
|
| 112 |
+
f"Failed to create {database} at {URI}")
|
| 113 |
raise e
|
| 114 |
|
| 115 |
if connected:
|
|
|
|
| 371 |
|
| 372 |
async def get_knowledge_graph(
|
| 373 |
self, node_label: str, max_depth: int = 5
|
| 374 |
+
) -> KnowledgeGraph:
|
| 375 |
"""
|
| 376 |
Get complete connected subgraph for specified node (including the starting node itself)
|
| 377 |
|
|
|
|
| 382 |
4. Add depth control
|
| 383 |
"""
|
| 384 |
label = node_label.strip('"')
|
| 385 |
+
result = KnowledgeGraph()
|
| 386 |
seen_nodes = set()
|
| 387 |
seen_edges = set()
|
| 388 |
|
|
|
|
| 401 |
validate_query = f"MATCH (n:`{label}`) RETURN n LIMIT 1"
|
| 402 |
validate_result = await session.run(validate_query)
|
| 403 |
if not await validate_result.single():
|
| 404 |
+
logger.warning(
|
| 405 |
+
f"Starting node {label} does not exist!")
|
| 406 |
return result
|
| 407 |
|
| 408 |
# Optimized query (including direction handling and self-loops)
|
|
|
|
| 427 |
# Use node ID + label combination as unique identifier
|
| 428 |
node_id = node.id
|
| 429 |
if node_id not in seen_nodes:
|
| 430 |
+
result.nodes.append(KnowledgeGraphNode(
|
| 431 |
+
id=f"{node_id}",
|
| 432 |
+
labels=list(node.labels),
|
| 433 |
+
properties=dict(node),
|
| 434 |
+
))
|
| 435 |
seen_nodes.add(node_id)
|
| 436 |
|
| 437 |
# Handle relationships (including direction information)
|
|
|
|
| 440 |
if edge_id not in seen_edges:
|
| 441 |
start = rel.start_node
|
| 442 |
end = rel.end_node
|
| 443 |
+
result.edges.append(KnowledgeGraphEdge(
|
| 444 |
+
id=f"{edge_id}",
|
| 445 |
+
type=rel.type,
|
| 446 |
+
source=f"{start.id}",
|
| 447 |
+
target=f"{end.id}",
|
| 448 |
+
properties=dict(rel),
|
| 449 |
+
))
|
|
|
|
|
|
|
|
|
|
|
|
|
| 450 |
seen_edges.add(edge_id)
|
| 451 |
|
| 452 |
logger.info(
|
| 453 |
+
f"Subgraph query successful | Node count: {len(result.nodes)} | Edge count: {len(result.edges)}"
|
| 454 |
)
|
| 455 |
|
| 456 |
except neo4jExceptions.ClientError as e:
|
lightrag/lightrag.py
CHANGED
|
@@ -34,6 +34,7 @@ from .utils import (
|
|
| 34 |
logger,
|
| 35 |
set_logger,
|
| 36 |
)
|
|
|
|
| 37 |
|
| 38 |
STORAGES = {
|
| 39 |
"NetworkXStorage": ".kg.networkx_impl",
|
|
@@ -385,7 +386,7 @@ class LightRAG:
|
|
| 385 |
text = await self.chunk_entity_relation_graph.get_all_labels()
|
| 386 |
return text
|
| 387 |
|
| 388 |
-
async def
|
| 389 |
return await self.chunk_entity_relation_graph.get_knowledge_graph(
|
| 390 |
node_label=nodel_label, max_depth=max_depth
|
| 391 |
)
|
|
|
|
| 34 |
logger,
|
| 35 |
set_logger,
|
| 36 |
)
|
| 37 |
+
from .types import KnowledgeGraph
|
| 38 |
|
| 39 |
STORAGES = {
|
| 40 |
"NetworkXStorage": ".kg.networkx_impl",
|
|
|
|
| 386 |
text = await self.chunk_entity_relation_graph.get_all_labels()
|
| 387 |
return text
|
| 388 |
|
| 389 |
+
async def get_knowledge_graph(self, nodel_label: str, max_depth: int) -> KnowledgeGraph:
|
| 390 |
return await self.chunk_entity_relation_graph.get_knowledge_graph(
|
| 391 |
node_label=nodel_label, max_depth=max_depth
|
| 392 |
)
|
lightrag/types.py
CHANGED
|
@@ -1,7 +1,26 @@
|
|
| 1 |
from pydantic import BaseModel
|
| 2 |
-
from typing import List
|
| 3 |
|
| 4 |
|
| 5 |
class GPTKeywordExtractionFormat(BaseModel):
|
| 6 |
high_level_keywords: List[str]
|
| 7 |
low_level_keywords: List[str]
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
from pydantic import BaseModel
|
| 2 |
+
from typing import List, Dict, Any
|
| 3 |
|
| 4 |
|
| 5 |
class GPTKeywordExtractionFormat(BaseModel):
|
| 6 |
high_level_keywords: List[str]
|
| 7 |
low_level_keywords: List[str]
|
| 8 |
+
|
| 9 |
+
|
| 10 |
+
class KnowledgeGraphNode(BaseModel):
|
| 11 |
+
id: str
|
| 12 |
+
labels: List[str]
|
| 13 |
+
properties: Dict[str, Any] # anything else goes here
|
| 14 |
+
|
| 15 |
+
|
| 16 |
+
class KnowledgeGraphEdge(BaseModel):
|
| 17 |
+
id: str
|
| 18 |
+
type: str
|
| 19 |
+
source: str # id of source node
|
| 20 |
+
target: str # id of target node
|
| 21 |
+
properties: Dict[str, Any] # anything else goes here
|
| 22 |
+
|
| 23 |
+
|
| 24 |
+
class KnowledgeGraph(BaseModel):
|
| 25 |
+
nodes: List[KnowledgeGraphNode] = []
|
| 26 |
+
edges: List[KnowledgeGraphEdge] = []
|