new build

Dockerfile

@@ -1,4 +1,4 @@
-FROM nvidia/cuda:12.2.2-cudnn8-devel-ubuntu22.04
+FROM nvidia/cuda:12.2.2-cudnn8-devel-ubuntu22.04 as base
 
 ENV DEBIAN_FRONTEND=noninteractive \
     TZ=America/Los_Angeles
@@ -57,6 +57,15 @@ ENV HOME=/home/user \
 RUN monailabel apps --name radiology --download --output apps
 RUN monailabel datasets --download --name Task09_Spleen --output datasets
 
+# build ohifv3 viewer
+FROM node:18.16.1-slim as builder
+RUN apt-get update && apt-get install -y build-essential yarn git && rm -rf /var/lib/apt/lists/*
+WORKDIR /code
+RUN git clone https://github.com/Project-MONAI/MONAILabel.git .
+WORKDIR /code/plugins/ohifv3
+COPY build-ohfiv3.sh monai_label.js /code/plugins/ohifv3/
+RUN ./build-ohfiv3.sh 
+
 # RUN monailabel datasets --download --name Task01_BrainTumour --output datasets
 # RUN monailabel datasets --download --name Task09_Spleen --output .
 # RUN plastimatch convert --patient-id patient1 --input Task09_Spleen/imagesTs/spleen_1.nii.gz --output-dicom dicom_output
@@ -66,6 +75,8 @@ RUN monailabel datasets --download --name Task09_Spleen --output datasets
 
 # /etc/orthanc/orthanc.json -> "RemoteAccessAllowed": false, -> "RemoteAccessAllowed": true,
 # RUN sed -i 's/"RemoteAccessAllowed" : false,/"RemoteAccessAllowed" : true,/g' /etc/orthanc/orthanc.json
+FROM base as final
+
 USER root
 RUN mkdir -p /var/cache/orthanc /var/log/orthanc /var/lib/orthanc && \
     chown -R user:user /var/cache/orthanc /var/log/orthanc  /usr/share/orthanc/ /var/lib/orthanc /etc/orthanc && \
@@ -75,6 +86,7 @@ RUN mkdir -p /var/cache/orthanc /var/log/orthanc /var/lib/orthanc && \
 
 COPY --chown=user orthanc.json /etc/orthanc/orthanc.json
 COPY --chown=user nginx.conf /etc/nginx/sites-available/default
+COPY --from=builder --chown=user /code/plugins/ohifv3/Viewers/platform/app/dist/ /usr/share/nginx/html
 
 USER user
 COPY --chown=user run.sh .

build-ohfiv3.sh

@@ -0,0 +1,23 @@
+#!/bin/bash
+
+git clone https://github.com/OHIF/Viewers.git
+cd Viewers
+git checkout 33f125940863607f8dba82c71b27a43f35431dd5
+
+#cp -r ../extensions/monai-label extensions/
+#cp -r ../modes/monai-label modes/monai-label
+cd extensions
+ln -s ../../extensions/monai-label monai-label
+cd ..
+
+cd modes
+ln -s ../../modes/monai-label monai-label
+cd ..
+
+git apply ../extensions.patch
+
+cp ../monai_label.js platform/app/public/config/monai_label.js
+
+yarn config set workspaces-experimental true
+yarn install --frozen-lockfile --verbose
+APP_CONFIG=config/monai_label.js PUBLIC_URL=/ QUICK_BUILD=true yarn run build

monai_label.js

@@ -0,0 +1,38 @@
+window.config = {
+    routerBasename: '/',
+    showStudyList: true,
+    extensions: [],
+    modes: [],
+    // below flag is for performance reasons, but it might not work for all servers
+
+    showWarningMessageForCrossOrigin: true,
+    showCPUFallbackMessage: true,
+    showLoadingIndicator: true,
+    strictZSpacingForVolumeViewport: true,
+    defaultDataSourceName: 'dicomweb',
+    useSharedArrayBuffer: 'FALSE',
+    dataSources: [
+        {
+            namespace: '@ohif/extension-default.dataSourcesModule.dicomweb',
+            sourceName: 'dicomweb',
+            configuration: {
+                friendlyName: 'Orthanc Server',
+                name: 'Orthanc',
+                wadoUriRoot: 'orthanc/dicom-web/wado',
+                qidoRoot: 'orthanc/dicom-web/qido',
+                wadoRoot: 'orthanc/dicom-web/wado',
+                qidoSupportsIncludeField: true,
+                supportsReject: true,
+                imageRendering: 'wadors',
+                thumbnailRendering: 'wadors',
+                enableStudyLazyLoad: false,
+                supportsFuzzyMatching: true,
+                supportsWildcard: true,
+                dicomUploadEnabled: true,
+                bulkDataURI: {
+                    enabled: true,
+                },
+            },
+        },
+    ],
+};

nginx.conf

@@ -1,6 +1,19 @@
 server {
     listen 4444 default_server;
     server_name _;
+    location / {
+        root   /usr/share/nginx/html;
+        index  index.html index.htm;
+        try_files $uri $uri/ /index.html;
+        add_header Cross-Origin-Opener-Policy same-origin;
+        add_header Cross-Origin-Embedder-Policy require-corp;
+        add_header Cross-Origin-Resource-Policy cross-origin;
+        proxy_set_header Host $host;
+        proxy_set_header X-Real-IP $remote_addr;
+        proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
+        proxy_set_header X-Forwarded-Proto $http_x_forwarded_proto;
+    }
+ 
 
     # location / {
     #     # Proxy pass to the app at /ohif
@@ -18,19 +31,19 @@ server {
     #     # Handling URI
     #     proxy_set_header X-Forwarded-Prefix "/";
     # }
-    location / {
-        # Proxy pass to the app at /ohif
-        proxy_pass http://0.0.0.0:8000;
-        proxy_http_version 1.1;
-        proxy_set_header Upgrade $http_upgrade;
-        proxy_set_header Connection 'upgrade';
-        proxy_set_header Host $host;
-        proxy_set_header X-Real-IP $remote_addr;
-        proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
-        proxy_cache_bypass $http_upgrade;
-        proxy_read_timeout 86400;
-        proxy_redirect off;
-    }
+    # location / {
+    #     # Proxy pass to the app at /ohif
+    #     proxy_pass http://0.0.0.0:8000;
+    #     proxy_http_version 1.1;
+    #     proxy_set_header Upgrade $http_upgrade;
+    #     proxy_set_header Connection 'upgrade';
+    #     proxy_set_header Host $host;
+    #     proxy_set_header X-Real-IP $remote_addr;
+    #     proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
+    #     proxy_cache_bypass $http_upgrade;
+    #     proxy_read_timeout 86400;
+    #     proxy_redirect off;
+    # }
     location /orthanc {
         # Serve backend from port 
         proxy_pass http://0.0.0.0:8042;

run.sh

@@ -1,7 +1,7 @@
 #!/bin/bash
 
 # Start the orthanc service
-# nginx &
+nginx &
 Orthanc /etc/orthanc/orthanc.json &
 
 # for i in ls datasets/Task09_Spleen/imagesTs/*.nii.gz; do