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| import nltk | |
| import re | |
| import nltkmodule | |
| from newspaper import Article | |
| from newspaper import fulltext | |
| import requests | |
| from nltk.tokenize import word_tokenize | |
| from sentence_transformers import SentenceTransformer, models, losses, LoggingHandler | |
| import pandas as pd | |
| import numpy as np | |
| from torch.utils.data import DataLoader | |
| import math | |
| from sentence_transformers.evaluation import EmbeddingSimilarityEvaluator | |
| from sentence_transformers.readers import * | |
| from nltk.corpus import stopwords | |
| stop_words = stopwords.words('english') | |
| from sklearn.metrics.pairwise import cosine_similarity | |
| import networkx as nx | |
| from nltk.tokenize import sent_tokenize | |
| import scispacy | |
| import en_core_sci_lg | |
| import string | |
| import gradio as gr | |
| import inflect | |
| inflect_op = inflect.engine() | |
| nlp = en_core_sci_lg.load() | |
| sp = en_core_sci_lg.load() | |
| all_stopwords = sp.Defaults.stop_words | |
| def remove_stopwords(sen): | |
| sen_new = " ".join([i for i in sen if i not in stop_words]) | |
| return sen_new | |
| def keyphrase_generator(article_link, model_1, model_2, max_num_keywords): | |
| element=[] | |
| final_textrank_list=[] | |
| document=[] | |
| text_doc=[] | |
| score_list=[] | |
| sum_list=[] | |
| model_1 = SentenceTransformer(model_1) | |
| model_2 = SentenceTransformer(model_2) | |
| url = article_link | |
| html = requests.get(url).text | |
| article = fulltext(html) | |
| corpus=sent_tokenize(article) | |
| indicator_list=['concluded','concludes','in a study', 'concluding','conclude','in sum','in a recent study','therefore','thus','so','hence', | |
| 'as a result','accordingly','consequently','in short','proves that','shows that','suggests that','demonstrates that','found that','observed that', | |
| 'indicated that','suggested that','demonstrated that'] | |
| count_dict={} | |
| for l in corpus: | |
| c=0 | |
| for l2 in indicator_list: | |
| if l.find(l2)!=-1: ### then it is a substring | |
| c=1 | |
| break | |
| if c:# | |
| count_dict[l]=1 | |
| else: | |
| count_dict[l]=0 | |
| for sent, score in count_dict.items(): | |
| score_list.append(score) | |
| clean_sentences_new = pd.Series(corpus).str.replace("[^a-zA-Z]", " ", regex=True).tolist() | |
| corpus_embeddings = model_1.encode(clean_sentences_new) | |
| sim_mat = np.zeros([len(clean_sentences_new), len(clean_sentences_new)]) | |
| for i in range(len(clean_sentences_new)): | |
| len_embeddings=(len(corpus_embeddings[i])) | |
| for j in range(len(clean_sentences_new)): | |
| if i != j: | |
| if(len_embeddings == 1024): | |
| sim_mat[i][j] = cosine_similarity(corpus_embeddings[i].reshape(1,1024), corpus_embeddings[j].reshape(1,1024))[0,0] | |
| elif(len_embeddings == 768): | |
| sim_mat[i][j] = cosine_similarity(corpus_embeddings[i].reshape(1,768), corpus_embeddings[j].reshape(1,768))[0,0] | |
| nx_graph = nx.from_numpy_array(sim_mat) | |
| scores = nx.pagerank(nx_graph) | |
| sentences=((scores[i],s) for i,s in enumerate(corpus)) | |
| for elem in sentences: | |
| element.append(elem[0]) | |
| for sc, lst in zip(score_list, element): ########### taking the scores from both the lists | |
| sum1=sc+lst | |
| sum_list.append(sum1) | |
| x=sorted(((sum_list[i],s) for i,s in enumerate(corpus)), reverse=True) | |
| for elem in x: | |
| final_textrank_list.append(elem[1]) | |
| a=int((10*len(final_textrank_list))/100.0) | |
| if(a<5): | |
| total=5 | |
| else: | |
| total=int(a) | |
| for i in range(total): | |
| document.append(final_textrank_list[i]) | |
| doc=" ".join(document) | |
| for i in document: | |
| doc_1=nlp(i) | |
| text_doc.append([X.text for X in doc_1.ents]) | |
| entity_list = [item for sublist in text_doc for item in sublist] | |
| entity_list = [word for word in entity_list if not word in all_stopwords] | |
| entity_list = [word_entity for word_entity in entity_list if(inflect_op.singular_noun(word_entity) == False)] | |
| entity_list=list(dict.fromkeys(entity_list)) | |
| doc_embedding = model_2.encode([doc]) | |
| candidates=entity_list | |
| candidate_embeddings = model_2.encode(candidates) | |
| distances = cosine_similarity(doc_embedding, candidate_embeddings) | |
| top_n = max_num_keywords | |
| keyword_list = [candidates[index] for index in distances.argsort()[0][-top_n:]] | |
| keywords = '\n'.join(keyword_list) | |
| return keywords | |
| igen=gr.Interface(keyphrase_generator, | |
| inputs=[gr.components.Textbox(lines=1, placeholder="Provide an online health article web link here",default="", label="Article web link"), | |
| gr.components.Dropdown(choices=['sentence-transformers/all-mpnet-base-v2', | |
| 'sentence-transformers/all-mpnet-base-v1', | |
| 'sentence-transformers/all-distilroberta-v1', | |
| 'sentence-transformers/gtr-t5-large', | |
| 'pritamdeka/S-Bluebert-snli-multinli-stsb', | |
| 'pritamdeka/S-Biomed-Roberta-snli-multinli-stsb', | |
| 'sentence-transformers/stsb-mpnet-base-v2', | |
| 'sentence-transformers/all-roberta-large-v1', | |
| 'sentence-transformers/stsb-roberta-base-v2', | |
| 'sentence-transformers/stsb-distilroberta-base-v2', | |
| 'sentence-transformers/sentence-t5-large', | |
| 'sentence-transformers/sentence-t5-base'], | |
| type="value", | |
| default='pritamdeka/S-Biomed-Roberta-snli-multinli-stsb', | |
| label="Select any SBERT model for TextRank from the list below"), | |
| gr.components.Dropdown(choices=['sentence-transformers/paraphrase-mpnet-base-v2', | |
| 'sentence-transformers/all-mpnet-base-v1', | |
| 'sentence-transformers/paraphrase-distilroberta-base-v1', | |
| 'sentence-transformers/paraphrase-xlm-r-multilingual-v1', | |
| 'sentence-transformers/paraphrase-multilingual-mpnet-base-v2', | |
| 'sentence-transformers/paraphrase-albert-small-v2', | |
| 'sentence-transformers/paraphrase-albert-base-v2', | |
| 'sentence-transformers/paraphrase-MiniLM-L12-v2', | |
| 'sentence-transformers/paraphrase-MiniLM-L6-v2', | |
| 'sentence-transformers/all-MiniLM-L12-v2', | |
| 'sentence-transformers/all-distilroberta-v1', | |
| 'sentence-transformers/paraphrase-TinyBERT-L6-v2', | |
| 'sentence-transformers/paraphrase-MiniLM-L3-v2', | |
| 'sentence-transformers/all-MiniLM-L6-v2'], | |
| type="value", | |
| default='sentence-transformers/all-mpnet-base-v1', | |
| label="Select any SBERT model for keyphrases from the list below"), | |
| gr.components.Slider(minimum=5, maximum=30, step=1, default=10, label="Max Keywords")], | |
| outputs=gr.outputs.Textbox(type="text", label="Output"), theme="peach", | |
| title="Health Article Keyphrase Generator", | |
| description="Generates the keyphrases from an online health article which best describes the article. Examples are provided below for demo purposes. Choose any one example to see the results. ", | |
| examples=[ | |
| ["https://www.cancer.news/2021-12-22-mrna-vaccines-weaken-immune-system-cause-cancer.html", | |
| 'sentence-transformers/all-mpnet-base-v1', | |
| 'sentence-transformers/paraphrase-MiniLM-L12-v2', | |
| 10], | |
| ["https://www.cancer.news/2022-02-04-doctors-testifying-covid-vaccines-causing-cancer-aids.html#", | |
| 'sentence-transformers/all-mpnet-base-v1', | |
| 'sentence-transformers/all-mpnet-base-v1', | |
| 12], | |
| ["https://www.medicalnewstoday.com/articles/alzheimers-addressing-sleep-disturbance-may-alleviate-symptoms", | |
| 'pritamdeka/S-Biomed-Roberta-snli-multinli-stsb', | |
| 'sentence-transformers/all-mpnet-base-v1', | |
| 10], | |
| ["https://www.medicalnewstoday.com/articles/omicron-what-do-we-know-about-the-stealth-variant", | |
| 'pritamdeka/S-Biomed-Roberta-snli-multinli-stsb', | |
| 'sentence-transformers/all-mpnet-base-v1', | |
| 15] | |
| ], | |
| article= "The work is based on a part of the paper provided <a href=https://dl.acm.org/doi/10.1145/3487664.3487701>here</a>." | |
| "\t It uses the TextRank algorithm with <a href=https://www.sbert.net/>SBERT</a> to first find the top ranked sentences and then extracts the keyphrases" | |
| "\t from those sentences using <a href = https://allenai.github.io/scispacy/>scispaCy</a> and SBERT." | |
| "\t The list of SBERT models provided can be found in <a href=www.sbert.net/docs/pretrained_models.html>SBERT Pre-trained models hub</a>." | |
| "\t The default model names are provided which can be changed from the list of models available. " | |
| "\t The value of output keyphrases can be changed. The default value is 10, minimum is 5 and a maximum value of 30.") | |
| igen.launch(share=False) | |
| #### |