settings/bottom.yaml

leafmachine:
  LLM_version: Azure GPT 4 Turbo 1106-preview
  archival_component_detector:
    detector_iteration: PREP_final
    detector_type: Archival_Detector
    detector_version: PREP_final
    detector_weights: best.pt
    do_save_prediction_overlay_images: true
    ignore_objects_for_overlay: []
    minimum_confidence_threshold: 0.5
  cropped_components:
    binarize_labels: false
    binarize_labels_skeletonize: false
    do_save_cropped_annotations: true
    save_cropped_annotations:
    - label
    - barcode
    save_per_annotation_class: true
    save_per_image: false
  data:
    do_apply_conversion_factor: false
    include_darwin_core_data_from_combined_file: false
    save_individual_csv_files_landmarks: false
    save_individual_csv_files_measurements: false
    save_individual_csv_files_rulers: false
    save_individual_efd_files: false
    save_json_measurements: false
    save_json_rulers: false
  do:
    check_for_corrupt_images_make_vertical: true
    check_for_illegal_filenames: false
  do_create_OCR_helper_image: false
  logging:
    log_level: null
  modules:
    specimen_crop: true
  overlay:
    alpha_transparency_archival: 0.3
    alpha_transparency_plant: 0
    alpha_transparency_seg_partial_leaf: 0.3
    alpha_transparency_seg_whole_leaf: 0.4
    ignore_archival_detections_classes: []
    ignore_landmark_classes: []
    ignore_plant_detections_classes:
    - leaf_whole
    - specimen
    line_width_archival: 12
    line_width_efd: 12
    line_width_plant: 12
    line_width_seg: 12
    overlay_background_color: black
    overlay_dpi: 300
    save_overlay_to_jpgs: true
    save_overlay_to_pdf: false
    show_archival_detections: true
    show_landmarks: true
    show_plant_detections: true
    show_segmentations: true
  print:
    optional_warnings: true
    verbose: true
  project:
    OCR_option: both
    batch_size: 500
    build_new_embeddings_database: false
    catalog_numerical_only: false
    continue_run_from_partial_xlsx: ''
    delete_all_temps: false
    delete_temps_keep_VVE: false
    dir_images_local: d:\Dropbox\VoucherVision\demo\demo_images
    dir_output: C:\Users\Will\Downloads
    do_use_trOCR: true
    embeddings_database_name: SLTP_UM_AllAsiaMinimalInRegion
    image_location: local
    num_workers: 8
    path_to_domain_knowledge_xlsx: d:\Dropbox\VoucherVision\domain_knowledge\SLTP_UM_AllAsiaMinimalInRegion.xlsx
    prefix_removal: ''
    prompt_version: SLTPvA_long.yaml
    run_name: test
    suffix_removal: ''
    use_domain_knowledge: false
  use_RGB_label_images: true