Add GBIF specimens

Dockerfile

@@ -1,5 +1,6 @@
 FROM python:3.11
 
+
 WORKDIR /code
 
 COPY ./requirements.txt /code/requirements.txt
@@ -8,6 +9,14 @@ RUN pip install --no-cache-dir --upgrade -r /code/requirements.txt
 
 ADD https://docs.google.com/uc?export=download&id=17mI5W0qiGiBp_RV1jy3QR3KtN7Ah-1Ha /code/ihinst.db
 
+# Download GBIF occurrences and prepare for use with datasette
+RUN mkdir data
+ADD https://api.gbif.org/v1/occurrence/download/request/0032228-231002084531237.zip /data/gbif-occs.zip
+RUN unzip data/gbif-occs.zip -d data
+RUN ls -l data
+RUN csvs-to-sqlite data/occurrences.csv code/gbifocc.db
+RUN ls -l code
+
 RUN sqlite-utils tables /code/ihinst.db --counts
 RUN chmod 755 /code/ihinst.db
 

requirements.txt

@@ -1,3 +1,5 @@
 datasette
 datasette-reconcile
-sqlite-utils
+sqlite-utils
+csvs-to-sqlite
+pandas==1.4.0