wzkariampuzha commited on
Commit
33894f1
1 Parent(s): 28275dd

Update epi_pipeline.py

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Files changed (1) hide show
  1. epi_pipeline.py +2 -3
epi_pipeline.py CHANGED
@@ -823,8 +823,7 @@ def streamlit_extraction(search_term:Union[int,str], maxResults:int, filtering:s
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  epi_ner:NER_Pipeline, #for biobert extraction
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  GARD_Search:GARD_Search, extract_diseases:bool, #for disease extraction
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  epi_classify:Classify_Pipeline) -> pd.DataFrame: #for classification
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-
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-
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  #Format of Output
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  ordered_labels = order_labels(epi_ner.labels)
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  if extract_diseases:
@@ -874,7 +873,7 @@ def streamlit_extraction(search_term:Union[int,str], maxResults:int, filtering:s
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  sankey_data = (found, relevant, epidemiologic)
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  #Export the name and GARD ID to the ap for better integration on page.
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  name = search_term_list[-1].capitalize()
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- name_gardID = (name, GARD_dict[search_term_list[-1]])
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  return results.sort_values('PROB_OF_EPI', ascending=False), sankey_data, name_gardID
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  epi_ner:NER_Pipeline, #for biobert extraction
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  GARD_Search:GARD_Search, extract_diseases:bool, #for disease extraction
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  epi_classify:Classify_Pipeline) -> pd.DataFrame: #for classification
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+
 
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  #Format of Output
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  ordered_labels = order_labels(epi_ner.labels)
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  if extract_diseases:
 
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  sankey_data = (found, relevant, epidemiologic)
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  #Export the name and GARD ID to the ap for better integration on page.
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  name = search_term_list[-1].capitalize()
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+ name_gardID = (name, GARD_Search.GARD_dict[search_term_list[-1]])
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  return results.sort_values('PROB_OF_EPI', ascending=False), sankey_data, name_gardID
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