prerad / app.py
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import streamlit as st
from PIL import Image
from transformers import BlipForConditionalGeneration, BlipProcessor
processor = BlipProcessor.from_pretrained("nathansutton/generate-cxr")
model = BlipForConditionalGeneration.from_pretrained("nathansutton/generate-cxr")
def humanize_report(report: str) -> str:
report = report.replace("impression :","IMPRESSION:\n").replace("findings :","FINDINGS:\n").replace("indication :","INDICATION:\n")
sentences = [x.split("\n") for x in report.split(".") if x]
sentences = [item for sublist in sentences for item in sublist]
sentences = [x.strip().capitalize() if ':' not in x else x for x in sentences]
return ". ".join(sentences).replace(":.",":").replace("IMPRESSION:","\n\nIMPRESSION:\n\n").replace("FINDINGS:","\n\nFINDINGS:\n\n").replace("INDICATION:","INDICATION:\n\n")
indication = st.text_input("What is the indication for this study")
img_file_buffer = st.file_uploader("Upload a single view from a Chest X-Ray (JPG preferred)")
if img_file_buffer is not None and indication is not None:
image = Image.open(img_file_buffer)
st.image(image, use_column_width=True)
inputs = processor(
images=Image.open(img_file_buffer),
text='indication:' + indication,
return_tensors="pt"
)
output = model.generate(**inputs,max_length=512)
report = processor.decode(output[0], skip_special_tokens=True)
st.write(humanize_report(report))