Spaces:
Sleeping
Sleeping
Commit
·
21ff138
1
Parent(s):
5ebed13
Add Application file
Browse files- .gitignore +5 -0
- app.py +134 -0
- requirements.txt +10 -0
- setup.py +22 -0
.gitignore
ADDED
|
@@ -0,0 +1,5 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
*__pycache__
|
| 2 |
+
logs/
|
| 3 |
+
medeyecare_venv/
|
| 4 |
+
*.egg-info
|
| 5 |
+
*.DS_Store
|
app.py
ADDED
|
@@ -0,0 +1,134 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import streamlit as st
|
| 2 |
+
import requests
|
| 3 |
+
import os
|
| 4 |
+
import shutil
|
| 5 |
+
from pathlib import Path
|
| 6 |
+
|
| 7 |
+
# Define API endpoint
|
| 8 |
+
API_URL = "https://nagur-shareef-shaik-retinal-health-diagnostics.hf.space/predict"
|
| 9 |
+
SPACE_URL = "https://nagur-shareef-shaik-medeyecare.hf.space/"
|
| 10 |
+
|
| 11 |
+
# Ensure uploads directory exists
|
| 12 |
+
UPLOAD_FOLDER = "uploads"
|
| 13 |
+
os.makedirs(UPLOAD_FOLDER, exist_ok=True)
|
| 14 |
+
|
| 15 |
+
###### Sidebar ######
|
| 16 |
+
|
| 17 |
+
# Custom CSS to make the sidebar fixed and adjust width
|
| 18 |
+
st.markdown(
|
| 19 |
+
"""
|
| 20 |
+
<style>
|
| 21 |
+
[data-testid="stSidebar"] {
|
| 22 |
+
width: 750px !important; /* Adjust width as needed */
|
| 23 |
+
background-color: #f8f9fa; /* Light grey background */
|
| 24 |
+
}
|
| 25 |
+
[data-testid="stSidebarNav"] {
|
| 26 |
+
position: fixed;
|
| 27 |
+
width: 750px;
|
| 28 |
+
}
|
| 29 |
+
</style>
|
| 30 |
+
""",
|
| 31 |
+
unsafe_allow_html=True,
|
| 32 |
+
)
|
| 33 |
+
|
| 34 |
+
st.sidebar.header("Intelligent Application for Retinal Diseases Diagnosis")
|
| 35 |
+
st.sidebar.image("images/rhd_img_1.jpeg", width=1250)
|
| 36 |
+
|
| 37 |
+
st.sidebar.markdown("""
|
| 38 |
+
### Get AI-Powered Diagnosis Report
|
| 39 |
+
|
| 40 |
+
1. **Enter Patient Details**
|
| 41 |
+
- Name, Age, Gender, Contact Information, Address
|
| 42 |
+
- Select Diagnosis Task (**General, Retinopathy, DME, Cataracts**)
|
| 43 |
+
- **General:** Diagnoses Diabetic Retinopathy, Cataracts, Glaucoma, & Normal conditions from retinal fundus images.
|
| 44 |
+
- **Retinopathy:** Detects 7 retinopathy severity grades (No DR, Mild NPDR, Moderate NPDR, Severe NPDR, Very Severe NPDR, PDR, and Advanced PDR) from retinal scans.
|
| 45 |
+
- **DME:** Identifies the presence of Diabetic Macular Edema (DME) from retinal scans.
|
| 46 |
+
- **Cataracts:** Diagnoses Cataracts from digital eye images.
|
| 47 |
+
- Add Medical Notes (if any)
|
| 48 |
+
|
| 49 |
+
2. **Upload Retinal Scan**
|
| 50 |
+
- Accepts **JPG, JPEG, PNG** formats
|
| 51 |
+
- Ensure clear, high-quality images
|
| 52 |
+
|
| 53 |
+
3. **Submit for AI Analysis**
|
| 54 |
+
- Click **"Submit Request"** to send details to AI model
|
| 55 |
+
- AI processes the image and generates a diagnosis
|
| 56 |
+
|
| 57 |
+
4. **View Results Instantly**
|
| 58 |
+
- AI-powered diagnosis displayed with insights
|
| 59 |
+
- Download or share the report if needed
|
| 60 |
+
|
| 61 |
+
""")
|
| 62 |
+
|
| 63 |
+
# Create two columns
|
| 64 |
+
col1, col2 = st.columns([1, 3]) # Adjust the width ratio as needed
|
| 65 |
+
|
| 66 |
+
with col1:
|
| 67 |
+
st.image("images/rhd-logo.png", width=300) # Adjust width as needed
|
| 68 |
+
|
| 69 |
+
with col2:
|
| 70 |
+
st.title("Retinal Health Diagnostics")
|
| 71 |
+
|
| 72 |
+
# User input fields
|
| 73 |
+
task = st.selectbox("Select Task", ["general", "retinopathy", "dme", "cataracts"], index=0)
|
| 74 |
+
name = st.text_input("Name")
|
| 75 |
+
a, b, c = st.columns([1, 1, 1])
|
| 76 |
+
with a:
|
| 77 |
+
age = st.text_input("Age")
|
| 78 |
+
with b:
|
| 79 |
+
gender = st.selectbox("Gender", ["Male", "Female", "Other"], index=0)
|
| 80 |
+
with c:
|
| 81 |
+
phone = st.text_input("Phone")
|
| 82 |
+
email = st.text_input("Email")
|
| 83 |
+
address = st.text_area("Address")
|
| 84 |
+
med_notes = st.text_area("Medical Notes")
|
| 85 |
+
|
| 86 |
+
# Image upload
|
| 87 |
+
uploaded_file = st.file_uploader("Upload Retinal Image", type=["jpg", "jpeg", "png"])
|
| 88 |
+
|
| 89 |
+
if uploaded_file:
|
| 90 |
+
file_path = os.path.join(Path(UPLOAD_FOLDER), uploaded_file.name)
|
| 91 |
+
# Save file in Hugging Face Space storage
|
| 92 |
+
with open(file_path, "wb") as f:
|
| 93 |
+
f.write(uploaded_file.getbuffer())
|
| 94 |
+
|
| 95 |
+
# Generate the public URL of the saved image
|
| 96 |
+
image_url = f"{SPACE_URL}/{UPLOAD_FOLDER}/{uploaded_file.name}"
|
| 97 |
+
|
| 98 |
+
st.success(f"Image uploaded! Accessible at: {image_url}")
|
| 99 |
+
st.image(image_url, caption="Uploaded Image")
|
| 100 |
+
|
| 101 |
+
# Submit button
|
| 102 |
+
if st.button("Submit Request"):
|
| 103 |
+
if not uploaded_file:
|
| 104 |
+
st.error("Please upload an image.")
|
| 105 |
+
else:
|
| 106 |
+
# Create request payload
|
| 107 |
+
payload = {
|
| 108 |
+
"task": task,
|
| 109 |
+
"img_path": str(file_path),
|
| 110 |
+
"name": name,
|
| 111 |
+
"age": age,
|
| 112 |
+
"gender": gender,
|
| 113 |
+
"address": address,
|
| 114 |
+
"phone": phone,
|
| 115 |
+
"email": email,
|
| 116 |
+
"med_notes": med_notes,
|
| 117 |
+
}
|
| 118 |
+
|
| 119 |
+
try:
|
| 120 |
+
response = requests.post(API_URL, json=payload)
|
| 121 |
+
if response.status_code == 200:
|
| 122 |
+
st.success("Diagnosis Complete!")
|
| 123 |
+
|
| 124 |
+
predicted_class = response.json().get("test_results", {}).get("predicted_class", None)
|
| 125 |
+
confidence = response.json().get("test_results", {}).get("confidence", None)
|
| 126 |
+
attention_map = response.json().get("test_results", {}).get("attention_map", None)
|
| 127 |
+
|
| 128 |
+
st.image(attention_map)
|
| 129 |
+
st.write(f"Result: **{predicted_class}** with confidance {confidence*100} %")
|
| 130 |
+
# st.json(response.json())
|
| 131 |
+
else:
|
| 132 |
+
st.error(f"Error {response.status_code}: {response.text}")
|
| 133 |
+
except requests.exceptions.RequestException as e:
|
| 134 |
+
st.error(f"Request failed: {e}")
|
requirements.txt
ADDED
|
@@ -0,0 +1,10 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
numpy
|
| 2 |
+
pandas
|
| 3 |
+
matplotlib
|
| 4 |
+
tqdm
|
| 5 |
+
scikit-learn
|
| 6 |
+
opencv-python
|
| 7 |
+
tensorflow
|
| 8 |
+
streamlit
|
| 9 |
+
uvicorn
|
| 10 |
+
fastapi
|
setup.py
ADDED
|
@@ -0,0 +1,22 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
from setuptools import setup, find_packages
|
| 2 |
+
from typing import List
|
| 3 |
+
|
| 4 |
+
HYPEN_E_DOT='-e .'
|
| 5 |
+
def get_requirements(filepath:str) -> List[str]:
|
| 6 |
+
with open(filepath) as file:
|
| 7 |
+
requirements = file.readlines()
|
| 8 |
+
requirements = [req.replace("\n", "") for req in requirements]
|
| 9 |
+
if HYPEN_E_DOT in requirements:
|
| 10 |
+
requirements.remove(HYPEN_E_DOT)
|
| 11 |
+
|
| 12 |
+
return requirements
|
| 13 |
+
|
| 14 |
+
setup(
|
| 15 |
+
name='medeyecare',
|
| 16 |
+
version='0.1.0',
|
| 17 |
+
description='Retinal Diseases Classification based on Guided Context Gating Attention',
|
| 18 |
+
author='Nagur Shareef Shaik',
|
| 19 |
+
author_email='shaiknagurshareef6@gmail.com',
|
| 20 |
+
packages=find_packages(),
|
| 21 |
+
install_requires=get_requirements('requirements.txt')
|
| 22 |
+
)
|