er-model / er_model_core /allometry.py
NOrentlicher
Merge branch 'main' into equation-update
463a5f4 unverified
"""
Allometric equations for converting tree measurements to biomass.
"""
from typing import Dict
def calculate_biomass(dbh: float, height: float, species_name: str, params: Dict[str, float]) -> float:
"""
Calculate total tree biomass using species-specific allometric equations from Zanvo et al. 2023.
Args:
dbh: Diameter at breast height (cm)
height: Tree height (m)
species_name: Name of the species ("species_A" for Rhizophora, "species_B" for Avicennia)
params: Dictionary containing allometric parameters
Returns:
Total tree biomass (above + below ground) in kg
"""
base = dbh**2 * height
if base <= 0:
print(f"[ERROR] Non-positive base in calculate_biomass: dbh={dbh}, height={height}, base={base}, species={species_name}")
# Use Zanvo et al. 2023 equations that include both DBH and height
# Use Komiyama et al. 2005 generic mangrove equation for the else statement, the generic for all other mangroves
# Note that Komiyama generic equation is used with the average density value of 0.71 g/cm3 found across various mangrove species
if species_name == "species_A": # Rhizophora racemosa
# Total = 2.0738 × (DBH² H)^0.67628
total_biomass = 2.0738 * (dbh**2 * height)**0.67628
elif species_name == "species_B": # Avicennia germinans
# Total = 1.5595 × (DBH² H)^0.55864
total_biomass = 1.5595 * (dbh**2 * height)**0.55864
else:
# Use a conservative generic equation if species not recognized
total_biomass = 0.251 * 0.71 * (dbh**2.46)
return total_biomass