Update app.py

app.py

@@ -51,6 +51,7 @@ def plot_flows(y):
     return flow
 
 def plot_outlines(img, masks):
+    img = normalize99(img)
     outpix = []
     contours, hierarchy = cv2.findContours(masks.astype(np.int32), mode=cv2.RETR_FLOODFILL, method=cv2.CHAIN_APPROX_SIMPLE)
     for c in range(len(contours)):
@@ -263,9 +264,9 @@ with gr.Blocks(title = "Hello",
             input_image = gr.Image(label = "Input image", type = "filepath")
 
             with gr.Row():
-                with gr.Column(scale=1):
-                    filepath = gr.UploadButton("Upload (png, jpg, tif etc)", visible=True, file_count = "single")
-                    resize = gr.Number(label = 'max resize', value = 1000)                
+                #with gr.Column(scale=1):
+                    #filepath = gr.UploadButton("Upload (png, jpg, tif etc)", visible=True, file_count = "single")
+                resize = gr.Number(label = 'max resize', value = 1000)                
 
                 with gr.Column(scale=1):
                     send_btn = gr.Button("Run Cellpose-SAM")
@@ -287,7 +288,7 @@ with gr.Blocks(title = "Hello",
         sample_list.append("samples/img%0.2d.png"%j)
     gr.Examples(sample_list, inputs=input_image, examples_per_page=25)
     
-    input_image.change(update_image, input_image, [input_image, filepath])
+    #input_image.change(update_image, input_image, [input_image, filepath])
     #up_btn.upload(upload_file, up_btn, [input_image, up_btn, down_btn, down_btn2])
     send_btn.click(cellpose_segment, [filepath, resize], [img_outlines, img_overlay, flows, down_btn, down_btn2])