Upload batutils.py
Browse files- batutils.py +271 -0
batutils.py
ADDED
@@ -0,0 +1,271 @@
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1 |
+
from utils.pharmap_utils.dtxutils import *
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2 |
+
from utils.pharmap_utils.dictutils import *
|
3 |
+
import streamlit as st
|
4 |
+
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5 |
+
@st.cache(suppress_st_warning=True,allow_output_mutation=True)
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6 |
+
def flow(c_text, ct_text):
|
7 |
+
# print('inside flow function')
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8 |
+
if c_text:
|
9 |
+
# print('if 1')
|
10 |
+
c_text = c_text.lower().strip()
|
11 |
+
c_text = remove_stopwords(replace_text(split_values(c_text)))
|
12 |
+
c_text = gb_2_us(c_text, gb_2_us_dict)
|
13 |
+
c_text = fix_text_with_dict(c_text,repl_dict)
|
14 |
+
mesh_term_list = c_text.split(',')
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15 |
+
l2_map = type_extract(mesh_term_list)
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16 |
+
if l2_map:
|
17 |
+
ta_map = list(set(map(mesh_to_ta_dict.get, l2_map)))
|
18 |
+
# print(ta_map)
|
19 |
+
return ta_map
|
20 |
+
if ct_text:
|
21 |
+
# print(ct_text)
|
22 |
+
# print("inside first ct if")
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23 |
+
ct_text = ct_text.lower().strip()
|
24 |
+
ct_text = remove_stopwords(replace_text(split_values(ct_text)))
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25 |
+
ct_text = gb_2_us(ct_text,gb_2_us_dict)
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26 |
+
# print("ct text before dict replacement:",ct_text)
|
27 |
+
ct_text = fix_text_with_dict(ct_text,repl_dict)
|
28 |
+
# print("ct text after dict replacement:",ct_text)
|
29 |
+
mesh_term_list = ct_text.split(',')
|
30 |
+
# print(mesh_term_list)
|
31 |
+
l2_map = type_extract(mesh_term_list)
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32 |
+
if l2_map:
|
33 |
+
ta_map = list(set(map(mesh_to_ta_dict.get, l2_map)))
|
34 |
+
# print(ta_map)
|
35 |
+
return ta_map
|
36 |
+
if not ct_text:
|
37 |
+
# print(ct_text)
|
38 |
+
# print("inside second ct if")
|
39 |
+
ct_text = ct_text.lower().strip()
|
40 |
+
ct_text = remove_stopwords(replace_text(split_values(ct_text)))
|
41 |
+
ct_text = gb_2_us(ct_text,gb_2_us_dict)
|
42 |
+
ct_text = fix_text_with_dict(ct_text,repl_dict)
|
43 |
+
# print("ct text after dict replacement:",ct_text)
|
44 |
+
mesh_term_list = ct_text.split(', ')
|
45 |
+
l2_map = type_extract(mesh_term_list)
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46 |
+
if l2_map:
|
47 |
+
ta_map = list(set(map(mesh_to_ta_dict.get, l2_map)))
|
48 |
+
# print(ta_map)
|
49 |
+
return ta_map
|
50 |
+
if not ct_text:
|
51 |
+
ct_text = ct_text.lower().strip()
|
52 |
+
ct_text = remove_stopwords(replace_text(split_values(ct_text)))
|
53 |
+
ct_text = gb_2_us(ct_text,gb_2_us_dict)
|
54 |
+
# print("ct text before dict replacement:",ct_text)
|
55 |
+
ct_text = fix_text_with_dict(ct_text,repl_dict)
|
56 |
+
# print("ct text after dict replacement:",ct_text)
|
57 |
+
mesh_term_list = ct_text.split('/')
|
58 |
+
# print(ct_text)
|
59 |
+
l2_map = type_extract(mesh_term_list)
|
60 |
+
if l2_map:
|
61 |
+
ta_map = list(set(map(mesh_to_ta_dict.get, l2_map)))
|
62 |
+
# print(ta_map)
|
63 |
+
return ta_map
|
64 |
+
if not ct_text:
|
65 |
+
# print("inside second elif for ct text")
|
66 |
+
ct_text = ct_text.lower().strip()
|
67 |
+
ct_text = remove_stopwords(replace_text(split_values(ct_text)))
|
68 |
+
ct_text = gb_2_us(ct_text,gb_2_us_dict)
|
69 |
+
# print("ct text before dict replacement:",ct_text)
|
70 |
+
ct_text = fix_text_with_dict(ct_text,repl_dict)
|
71 |
+
# print("ct text after dict replacement:",ct_text)
|
72 |
+
mesh_term_list = ct_text.split('./')
|
73 |
+
# print(mesh_term_list)
|
74 |
+
l2_map = type_extract(mesh_term_list)
|
75 |
+
if l2_map:
|
76 |
+
ta_map = list(set(map(mesh_to_ta_dict.get, l2_map)))
|
77 |
+
# print(ta_map)
|
78 |
+
return ta_map
|
79 |
+
if not ct_text:
|
80 |
+
# print("inside second elif for ct text")
|
81 |
+
ct_text = ct_text.lower().strip()
|
82 |
+
ct_text = remove_stopwords(replace_text(split_values(ct_text)))
|
83 |
+
ct_text = gb_2_us(ct_text,gb_2_us_dict)
|
84 |
+
# print("ct text before dict replacement:",ct_text)
|
85 |
+
ct_text = fix_text_with_dict(ct_text,repl_dict)
|
86 |
+
# print("ct text after dict replacement:",ct_text)
|
87 |
+
mesh_term_list = ct_text.split(',')
|
88 |
+
# print(mesh_term_list)
|
89 |
+
l2_map = type_extract(mesh_term_list)
|
90 |
+
if l2_map:
|
91 |
+
ta_map = list(set(map(mesh_to_ta_dict.get, l2_map)))
|
92 |
+
# print(ta_map)
|
93 |
+
return ta_map
|
94 |
+
if not ct_text:
|
95 |
+
# print("inside second elif for ct text")
|
96 |
+
ct_text = ct_text.lower().strip()
|
97 |
+
ct_text = remove_stopwords(replace_text(split_values(ct_text)))
|
98 |
+
ct_text = gb_2_us(ct_text,gb_2_us_dict)
|
99 |
+
ct_text = ''.join(ct_text.split(','))
|
100 |
+
ct_text = ''.join(ct_text.split('.'))
|
101 |
+
# print("ct text before dict replacement:",ct_text)
|
102 |
+
ct_text = fix_text_with_dict(ct_text,repl_dict)
|
103 |
+
# print("ct text after dict replacement:",ct_text)
|
104 |
+
mesh_term_list = ct_text.split(' ,')
|
105 |
+
# print(mesh_term_list)
|
106 |
+
l2_map = type_extract(mesh_term_list)
|
107 |
+
if l2_map:
|
108 |
+
ta_map = list(set(map(mesh_to_ta_dict.get, l2_map)))
|
109 |
+
# print(ta_map)
|
110 |
+
return ta_map
|
111 |
+
# if not c_text:
|
112 |
+
# # print("inside second elif for ct text")
|
113 |
+
# c_text = c_text.lower().strip()
|
114 |
+
# c_text = remove_stopwords(replace_text(split_values(c_text)))
|
115 |
+
# c_text = gb_2_us(c_text,gb_2_us_dict)
|
116 |
+
# c_text = ''.join(c_text.split(','))
|
117 |
+
# c_text = ''.join(c_text.split('.'))
|
118 |
+
# # print("ct text before dict replacement:",c_text)
|
119 |
+
# c_text = fix_text_with_dict(c_text,repl_dict)
|
120 |
+
# # print("ct text after dict replacement:",c_text)
|
121 |
+
# mesh_term_list = c_text.split(' ,')
|
122 |
+
# # print(mesh_term_list)
|
123 |
+
# l2_map = type_extract(mesh_term_list)
|
124 |
+
# if l2_map:
|
125 |
+
# ta_map = list(set(map(mesh_to_ta_dict.get, l2_map)))
|
126 |
+
# # print(ta_map)
|
127 |
+
# return ta_map
|
128 |
+
if not c_text:
|
129 |
+
# print("inside second elif for ct text")
|
130 |
+
c_text = c_text.lower().strip()
|
131 |
+
c_text = remove_stopwords(replace_text(split_values(c_text)))
|
132 |
+
c_text = gb_2_us(c_text,gb_2_us_dict)
|
133 |
+
# print("ct text before dict replacement:",c_text)
|
134 |
+
c_text = fix_text_with_dict(c_text,repl_dict)
|
135 |
+
# print("ct text after dict replacement:",c_text)
|
136 |
+
mesh_term_list = c_text.split(' ')
|
137 |
+
# print(mesh_term_list)' ,'
|
138 |
+
l2_map = type_extract(mesh_term_list)
|
139 |
+
if l2_map:
|
140 |
+
ta_map = list(set(map(mesh_to_ta_dict.get, l2_map)))
|
141 |
+
# print(ta_map)
|
142 |
+
return ta_map
|
143 |
+
if not ct_text:
|
144 |
+
# print("inside second elif for ct text")
|
145 |
+
ct_text = ct_text.lower().strip()
|
146 |
+
ct_text = remove_stopwords(replace_text(split_values(ct_text)))
|
147 |
+
ct_text = gb_2_us(ct_text,gb_2_us_dict)
|
148 |
+
# print("ct text before dict replacement:",ct_text)
|
149 |
+
ct_text = fix_text_with_dict(ct_text,repl_dict)
|
150 |
+
# print("ct text after dict replacement:",ct_text)
|
151 |
+
mesh_term_list = ct_text.split(' ')
|
152 |
+
# print(mesh_term_list)' ,'
|
153 |
+
l2_map = type_extract(mesh_term_list)
|
154 |
+
if l2_map:
|
155 |
+
ta_map = list(set(map(mesh_to_ta_dict.get, l2_map)))
|
156 |
+
# print(ta_map)
|
157 |
+
return ta_map
|
158 |
+
|
159 |
+
return []
|
160 |
+
|
161 |
+
@st.cache(suppress_st_warning=True, allow_output_mutation=True)
|
162 |
+
def non_url_flow(ct_text):
|
163 |
+
if ct_text:
|
164 |
+
# print('inside non_url_flow')
|
165 |
+
# print("inside first ct if")
|
166 |
+
ct_text = ct_text.lower().strip()
|
167 |
+
ct_text = remove_stopwords(replace_text(split_values(ct_text)))
|
168 |
+
ct_text = gb_2_us(ct_text,gb_2_us_dict)
|
169 |
+
# print("ct text before dict replacement:",ct_text)
|
170 |
+
ct_text = fix_text_with_dict(ct_text,repl_dict)
|
171 |
+
# print("ct text after dict replacement:",ct_text)
|
172 |
+
mesh_term_list = ct_text.split(',')
|
173 |
+
# print(mesh_term_list)
|
174 |
+
l2_map = type_extract(mesh_term_list)
|
175 |
+
if l2_map:
|
176 |
+
ta_map = list(set(map(mesh_to_ta_dict.get, l2_map)))
|
177 |
+
print(ta_map)
|
178 |
+
return ta_map
|
179 |
+
if not ct_text:
|
180 |
+
# print(ct_text)
|
181 |
+
# print("inside second ct if")
|
182 |
+
ct_text = ct_text.lower().strip()
|
183 |
+
ct_text = remove_stopwords(replace_text(split_values(ct_text)))
|
184 |
+
ct_text = gb_2_us(ct_text,gb_2_us_dict)
|
185 |
+
ct_text = fix_text_with_dict(ct_text,repl_dict)
|
186 |
+
# print("ct text after dict replacement:",ct_text)
|
187 |
+
mesh_term_list = ct_text.split(', ')
|
188 |
+
l2_map = type_extract(mesh_term_list)
|
189 |
+
if l2_map:
|
190 |
+
ta_map = list(set(map(mesh_to_ta_dict.get, l2_map)))
|
191 |
+
# print(ta_map)
|
192 |
+
return ta_map
|
193 |
+
if not ct_text:
|
194 |
+
# print("inside third ct if")
|
195 |
+
ct_text = ct_text.lower().strip()
|
196 |
+
ct_text = remove_stopwords(replace_text(split_values(ct_text)))
|
197 |
+
ct_text = gb_2_us(ct_text,gb_2_us_dict)
|
198 |
+
# print("ct text before dict replacement:",ct_text)
|
199 |
+
ct_text = fix_text_with_dict(ct_text,repl_dict)
|
200 |
+
# print("ct text after dict replacement:",ct_text)
|
201 |
+
mesh_term_list = ct_text.split('/')
|
202 |
+
# print(ct_text)
|
203 |
+
l2_map = type_extract(mesh_term_list)
|
204 |
+
if l2_map:
|
205 |
+
ta_map = list(set(map(mesh_to_ta_dict.get, l2_map)))
|
206 |
+
# print(ta_map)
|
207 |
+
return ta_map
|
208 |
+
if not ct_text:
|
209 |
+
# print("inside fourth if for ct text")
|
210 |
+
ct_text = ct_text.lower().strip()
|
211 |
+
ct_text = remove_stopwords(replace_text(split_values(ct_text)))
|
212 |
+
ct_text = gb_2_us(ct_text,gb_2_us_dict)
|
213 |
+
# print("ct text before dict replacement:",ct_text)
|
214 |
+
ct_text = fix_text_with_dict(ct_text,repl_dict)
|
215 |
+
# print("ct text after dict replacement:",ct_text)
|
216 |
+
mesh_term_list = ct_text.split('./')
|
217 |
+
# print(mesh_term_list)
|
218 |
+
l2_map = type_extract(mesh_term_list)
|
219 |
+
if l2_map:
|
220 |
+
ta_map = list(set(map(mesh_to_ta_dict.get, l2_map)))
|
221 |
+
# print(ta_map)
|
222 |
+
return ta_map
|
223 |
+
if not ct_text:
|
224 |
+
# print("inside fifth if for ct text")
|
225 |
+
ct_text = ct_text.lower().strip()
|
226 |
+
ct_text = remove_stopwords(replace_text(split_values(ct_text)))
|
227 |
+
ct_text = gb_2_us(ct_text,gb_2_us_dict)
|
228 |
+
# print("ct text before dict replacement:",ct_text)
|
229 |
+
ct_text = fix_text_with_dict(ct_text,repl_dict)
|
230 |
+
# print("ct text after dict replacement:",ct_text)
|
231 |
+
mesh_term_list = ct_text.split(',')
|
232 |
+
# print(mesh_term_list)
|
233 |
+
l2_map = type_extract(mesh_term_list)
|
234 |
+
if l2_map:
|
235 |
+
ta_map = list(set(map(mesh_to_ta_dict.get, l2_map)))
|
236 |
+
# print(ta_map)
|
237 |
+
return ta_map
|
238 |
+
if not ct_text:
|
239 |
+
# print("inside sixth elif for ct text")
|
240 |
+
ct_text = ct_text.lower().strip()
|
241 |
+
ct_text = remove_stopwords(replace_text(split_values(ct_text)))
|
242 |
+
ct_text = gb_2_us(ct_text,gb_2_us_dict)
|
243 |
+
ct_text = ''.join(ct_text.split(','))
|
244 |
+
ct_text = ''.join(ct_text.split('.'))
|
245 |
+
# print("ct text before dict replacement:",ct_text)
|
246 |
+
ct_text = fix_text_with_dict(ct_text,repl_dict)
|
247 |
+
# print("ct text after dict replacement:",ct_text)
|
248 |
+
mesh_term_list = ct_text.split(' ,')
|
249 |
+
# print(mesh_term_list)
|
250 |
+
l2_map = type_extract(mesh_term_list)
|
251 |
+
if l2_map:
|
252 |
+
ta_map = list(set(map(mesh_to_ta_dict.get, l2_map)))
|
253 |
+
# print(ta_map)
|
254 |
+
return ta_map
|
255 |
+
if not ct_text:
|
256 |
+
# print("inside seventh if for ct text")
|
257 |
+
ct_text = ct_text.lower().strip()
|
258 |
+
ct_text = remove_stopwords(replace_text(split_values(ct_text)))
|
259 |
+
ct_text = gb_2_us(ct_text,gb_2_us_dict)
|
260 |
+
# print("ct text before dict replacement:",ct_text)
|
261 |
+
ct_text = fix_text_with_dict(ct_text,repl_dict)
|
262 |
+
# print("ct text after dict replacement:",ct_text)
|
263 |
+
mesh_term_list = ct_text.split(' ')
|
264 |
+
# print(mesh_term_list)' ,'
|
265 |
+
l2_map = type_extract(mesh_term_list)
|
266 |
+
if l2_map:
|
267 |
+
ta_map = list(set(map(mesh_to_ta_dict.get, l2_map)))
|
268 |
+
print(ta_map)
|
269 |
+
return ta_map
|
270 |
+
|
271 |
+
return []
|