Ludvig
commited on
Commit
β’
8dd9b7b
1
Parent(s):
7f486ad
Fixes resetting. Refactors and adds templates. Use tile borders in sum settings.
Browse files- README.md +1 -0
- app.py +9 -3
- design.py +608 -504
- plot.R +12 -9
- template_resources/blues_nc2_1.1.png +0 -0
- template_resources/blues_nc2_sums_1.1.png +0 -0
- template_resources/blues_nc3_1.1.png +0 -0
- template_resources/blues_nc3_sums_1.1.png +0 -0
- template_resources/design_settings.blues_nc2_1.1.json +1 -0
- template_resources/design_settings.blues_nc2_sums_1.1.json +1 -0
- template_resources/design_settings.blues_nc3_1.1.json +1 -0
- template_resources/design_settings.blues_nc3_sums_1.1.json +1 -0
- templates/design_settings.grey_nc2_1.1.json β template_resources/design_settings.greys_nc2_1.1.json +1 -1
- templates/design_settings.grey_nc3_1.1.json β template_resources/design_settings.greys_nc2_sums_1.1.json +1 -1
- template_resources/design_settings.greys_nc3_1.1.json +1 -0
- template_resources/design_settings.greys_nc3_sums_1.1.json +1 -0
- template_resources/greys_nc2_1.1.png +0 -0
- template_resources/greys_nc2_sums_1.1.png +0 -0
- template_resources/greys_nc3_1.1.png +0 -0
- template_resources/greys_nc3_sums_1.1.png +0 -0
- templates.py +97 -0
- templates/design_settings.grey_nc2_sums_1.1.json +0 -1
- templates/grey_nc2_1.1.jpg +0 -0
- templates/grey_nc2_sums_1.1.jpg +0 -0
- templates/grey_nc3_1.1.jpg +0 -0
- text_sections.py +4 -4
README.md
CHANGED
@@ -14,6 +14,7 @@ Streamlit application for plotting a confusion matrix.
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## TODOs
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- ggsave only uses DPI for scaling? We would expect output files to have the given DPI?
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- Allow svg, pdf?
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- Add full reset button (empty cache on different files) - callback?
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## TODOs
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+
- Add option to preview plot in black and white (for printed papers)
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- ggsave only uses DPI for scaling? We would expect output files to have the given DPI?
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- Allow svg, pdf?
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- Add full reset button (empty cache on different files) - callback?
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app.py
CHANGED
@@ -60,6 +60,7 @@ def input_choice_callback():
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"""
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st.session_state["step"] = 0
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st.session_state["input_type"] = None
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to_delete = ["classes", "count_data", "uploaded_design_settings"]
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for key in to_delete:
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@@ -74,6 +75,9 @@ def input_choice_callback():
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if conf_mat_path.exists():
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conf_mat_path.unlink()
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# Text
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intro_text()
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@@ -84,7 +88,9 @@ if st.session_state.get("step") is None:
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st.session_state["step"] = 0
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input_choice = st.radio(
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label="Input",
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options=["Upload predictions", "Upload counts", "Generate", "Enter counts"],
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index=0,
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horizontal=True,
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@@ -358,7 +364,7 @@ if st.session_state["step"] >= 2:
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# Section for specifying design settings
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-
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num_classes=num_classes,
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design_settings_store_path=design_settings_store_path,
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)
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@@ -367,7 +373,7 @@ if st.session_state["step"] >= 2:
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# for user to fix issues
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if st.session_state["step"] >= 3 and design_ready:
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DownloadHeader.centered_json_download(
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data=
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file_name="design_settings.json",
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label="Download design settings",
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help="Download the design settings to allow reusing settings in future plots.",
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"""
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st.session_state["step"] = 0
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st.session_state["input_type"] = None
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st.session_state["num_resets"] = 0
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to_delete = ["classes", "count_data", "uploaded_design_settings"]
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for key in to_delete:
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if conf_mat_path.exists():
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conf_mat_path.unlink()
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+
# Allows design settings to show
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st.session_state["design_reset_mode"] = False
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# Text
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intro_text()
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st.session_state["step"] = 0
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input_choice = st.radio(
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label="Input Choice",
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label_visibility="hidden",
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key="InputChoice",
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options=["Upload predictions", "Upload counts", "Generate", "Enter counts"],
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index=0,
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horizontal=True,
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# Section for specifying design settings
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design_ready, selected_classes = design_section(
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num_classes=num_classes,
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design_settings_store_path=design_settings_store_path,
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)
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# for user to fix issues
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if st.session_state["step"] >= 3 and design_ready:
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DownloadHeader.centered_json_download(
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data=st.session_state["selected_design_settings"],
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file_name="design_settings.json",
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label="Download design settings",
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help="Download the design settings to allow reusing settings in future plots.",
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design.py
CHANGED
@@ -6,6 +6,7 @@ from PIL import Image
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from text_sections import (
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design_text,
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)
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def _add_select_box(
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@@ -31,110 +32,99 @@ def _add_select_box(
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)
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templates =
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"grey_1": {
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"Grey 2-class": {
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"settings": "design_settings.grey_nc2_1.1.json",
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"image": "grey_nc2_1.1.jpg",
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},
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"Grey 3-class": {
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"settings": "design_settings.grey_nc3_1.1.json",
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"image": "grey_nc3_1.1.jpg",
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},
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"Grey 2-class with sums": {
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"settings": "design_settings.grey_nc2_sums_1.1.json",
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"image": "grey_nc2_sums_1.1.jpg",
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},
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}
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}
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template_selections = {}
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def
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num_classes,
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design_settings_store_path,
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):
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output = {}
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def reset_output_callback():
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-
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if "uploaded_design_settings" in st.session_state:
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del st.session_state["uploaded_design_settings"]
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with st.
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for
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temp_image = Image.open(f"templates/{template['image']}")
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# temp_settings =
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with cols[i % 3]:
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st.image(
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temp_image,
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# caption="Confusion Matrix",
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clamp=False,
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channels="RGB",
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output_format="auto",
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)
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template_selections[temp_collection_name] = st.radio(
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"Select template",
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index=0,
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options=["--"] + list(temp_collection.keys()),
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horizontal=True,
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)
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st.markdown("---")
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with st.expander("Upload settings"):
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uploaded_settings_path = st.file_uploader(
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"Upload design settings", type=["json"]
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)
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-
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for temp_coll_name, selection in template_selections.items()
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if selection != "--"
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]
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if len(selections) > 1:
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st.warning("More than one template was selected. The first is applied.")
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template_selected = "--"
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if selections:
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selection_temp_coll_name, selection = selections[0]
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template_selected = selection
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if uploaded_settings_path is not None:
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if template_selected != "--":
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st.warning(
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"When both selecting a template and uploading settings, "
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"the uploaded settings are used."
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)
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st.session_state["uploaded_design_settings"] = json.load(
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uploaded_settings_path
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)
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elif template_selected != "--":
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with open(
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"templates/"
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+ templates[selection_temp_coll_name][template_selected][
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"settings"
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],
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"r",
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) as jfile:
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st.session_state["uploaded_design_settings"] = json.load(jfile)
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else:
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st.warning(
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"No settings were uploaded and no templates were selected. Both are *optional*."
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)
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with col2:
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st.button("Reset design", on_click=reset_output_callback)
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def get_uploaded_setting(key, default, type_=None, options=None):
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if (
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"uploaded_design_settings" in st.session_state
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@@ -156,475 +146,589 @@ def design_section(
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return out
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return default
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-
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-
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"Select classes (min=2, order is respected)",
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options=st.session_state["classes"],
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default=st.session_state["classes"],
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help="Select the classes to create the confusion matrix for. "
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"Any observation with either a target or prediction "
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"of another class is excluded.",
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)
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# Reverse by default
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selected_classes.reverse()
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with col2:
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st.write(" ")
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st.write(" ")
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reverse_class_order = st.checkbox(
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"Reverse order", value=False, help="Reverse the order of the classes."
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)
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# Color palette
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col1, col2, col3, col4 = st.columns([4, 4, 2, 2])
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with col1:
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output["palette"] = _add_select_box(
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key="palette",
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label="Color Palette",
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default="Blues",
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options=["Blues", "Greens", "Oranges", "Greys", "Purples", "Reds"],
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get_setting_fn=get_uploaded_setting,
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type_=str,
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help="Color of the tiles. Select a preset color palette or create a custom gradient. ",
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)
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with col2:
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st.write("")
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st.write(" ")
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output["palette_use_custom"] = st.checkbox(
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"Custom gradient",
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value=False,
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help="Use a custom gradient for coloring the tiles.",
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)
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with col3:
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output["palette_custom_low"] = st.color_picker("Low color", value="#B1F9E8")
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with col4:
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output["palette_custom_high"] = st.color_picker(
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"High color", value="#239895"
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)
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-
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-
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with
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-
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"Width (px)",
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value=get_uploaded_setting(
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key="width", default=1200 + 100 * (num_classes - 2), type_=int
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),
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step=50,
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)
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with col2:
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output["height"] = st.number_input(
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"Height (px)",
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value=get_uploaded_setting(
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key="width", default=1200 + 100 * (num_classes - 2), type_=int
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),
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step=50,
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)
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with col3:
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output["dpi"] = st.number_input(
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"DPI (scaling)",
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value=get_uploaded_setting(key="dpi", default=320, type_=int),
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step=10,
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help="While the output file *currently* won't have this DPI, "
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"the DPI setting affects scaling of elements. ",
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)
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st.write(" ") # Slightly bigger gap between the two sections
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col1, col2, col3 = st.columns(3)
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with col1:
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output["show_counts"] = st.checkbox(
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"Show Counts",
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value=get_uploaded_setting(key="show_counts", default=True, type_=bool),
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)
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with col2:
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output["show_normalized"] = st.checkbox(
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"Show Normalized (%)",
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value=get_uploaded_setting(
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key="show_normalized", default=True, type_=bool
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),
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)
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with col3:
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output["show_sums"] = st.checkbox(
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"Show Sum Tiles",
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value=get_uploaded_setting(key="show_sums", default=False, type_=bool),
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help="Show extra row and column with the "
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"totals for that row/column.",
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)
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st.markdown("""---""")
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st.markdown("**Advanced**:")
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with st.expander("Labels"):
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col1, col2 = st.columns(2)
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with col1:
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"
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)
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with col2:
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)
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col1, col2 = st.columns(2)
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with col1:
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"
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)
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with col2:
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)
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with col1:
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-
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"
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value=get_uploaded_setting(
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key="
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),
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)
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),
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)
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output["counts_on_top"] = st.checkbox(
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"Counts on top",
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value=get_uploaded_setting(
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key="
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),
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"The counts become the big centralized numbers and the "
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"normalized counts go below with a smaller font size.",
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)
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with
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"
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value=get_uploaded_setting(key="
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)
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st.
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col1, col2 = st.columns(2)
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with col1:
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st.
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value=get_uploaded_setting(
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key="
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),
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)
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),
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)
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output["show_arrows"] = st.checkbox(
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"Show arrows",
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value=get_uploaded_setting(
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key="
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),
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)
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-
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value=get_uploaded_setting(
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key="
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),
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)
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value=get_uploaded_setting(
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key="
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)
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min_value=0.03 * 10,
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365 |
-
max_value=0.06 * 10,
|
366 |
-
step=0.001 * 10,
|
367 |
)
|
368 |
-
|
369 |
-
|
370 |
-
|
371 |
-
st.
|
372 |
-
"
|
373 |
value=get_uploaded_setting(
|
374 |
-
key="
|
375 |
-
)
|
376 |
-
min_value=0.00,
|
377 |
-
max_value=0.1 * 10,
|
378 |
-
step=0.001 * 10,
|
379 |
)
|
380 |
-
/ 10
|
381 |
-
)
|
382 |
|
383 |
-
|
384 |
-
|
385 |
-
|
386 |
-
|
387 |
-
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388 |
-
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389 |
-
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390 |
-
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391 |
-
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392 |
-
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-
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394 |
-
|
395 |
-
|
396 |
-
"
|
397 |
-
]
|
398 |
-
|
399 |
-
|
400 |
-
|
401 |
-
|
402 |
-
|
403 |
-
|
404 |
-
|
405 |
-
|
406 |
-
|
407 |
-
key="darkness", default=0.8, type_=float
|
408 |
-
),
|
409 |
-
step=0.01,
|
410 |
-
help="How dark the darkest colors should be, between 0 and 1, where 1 is darkest.",
|
411 |
)
|
412 |
|
413 |
-
st.
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|
414 |
|
415 |
-
|
416 |
-
"Add tile borders",
|
417 |
-
value=get_uploaded_setting(
|
418 |
-
key="show_tile_border", default=False, type_=bool
|
419 |
-
),
|
420 |
-
)
|
421 |
|
422 |
-
|
423 |
-
|
424 |
-
|
425 |
-
"
|
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-
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-
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-
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-
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-
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-
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-
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-
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-
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-
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-
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-
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-
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-
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-
|
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-
|
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-
"
|
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-
|
448 |
-
"
|
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-
|
450 |
-
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451 |
-
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-
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-
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-
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-
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458 |
|
459 |
-
st.
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|
460 |
|
461 |
-
|
462 |
-
with col1:
|
463 |
-
output["sum_tile_palette"] = _add_select_box(
|
464 |
-
key="sum_tile_palette",
|
465 |
-
label="Color Palette",
|
466 |
-
default="Greens",
|
467 |
-
options=["Greens", "Oranges", "Greys", "Purples", "Reds", "Blues"],
|
468 |
-
get_setting_fn=get_uploaded_setting,
|
469 |
-
type_=str,
|
470 |
-
)
|
471 |
|
472 |
-
|
473 |
-
|
474 |
-
|
|
|
475 |
value=get_uploaded_setting(
|
476 |
-
key="
|
477 |
),
|
478 |
-
key="sum_tiles_label",
|
479 |
)
|
480 |
|
481 |
-
|
482 |
-
|
483 |
-
|
484 |
-
|
485 |
-
|
486 |
-
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487 |
-
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488 |
-
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489 |
-
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490 |
-
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491 |
-
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-
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493 |
-
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494 |
-
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-
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497 |
-
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498 |
-
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499 |
-
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500 |
-
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501 |
-
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502 |
-
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503 |
-
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504 |
-
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505 |
-
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506 |
-
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507 |
-
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508 |
-
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509 |
-
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510 |
-
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511 |
-
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512 |
-
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513 |
-
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514 |
-
|
515 |
-
|
516 |
-
|
517 |
-
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|
518 |
|
519 |
-
|
520 |
-
|
521 |
-
|
522 |
-
|
523 |
-
|
524 |
-
|
525 |
-
|
526 |
-
"
|
527 |
-
|
528 |
-
|
529 |
-
|
530 |
-
|
531 |
-
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|
532 |
},
|
533 |
-
|
534 |
-
|
535 |
-
|
536 |
-
|
537 |
-
|
538 |
-
|
539 |
-
|
540 |
-
|
541 |
-
|
542 |
-
|
543 |
},
|
544 |
-
|
545 |
-
|
546 |
-
|
547 |
-
|
548 |
-
|
549 |
-
|
550 |
-
|
551 |
-
|
552 |
-
|
553 |
-
|
554 |
-
|
555 |
-
|
556 |
},
|
557 |
-
|
558 |
-
|
559 |
-
|
560 |
-
|
561 |
-
|
562 |
-
|
563 |
-
|
564 |
-
|
565 |
-
|
566 |
-
|
567 |
-
}
|
568 |
-
|
569 |
-
|
570 |
-
|
571 |
-
|
572 |
-
|
573 |
-
|
574 |
-
|
575 |
-
|
576 |
-
|
577 |
-
|
578 |
-
)
|
579 |
|
580 |
-
|
581 |
-
|
582 |
-
|
583 |
-
|
584 |
-
|
585 |
-
|
586 |
-
|
587 |
-
|
588 |
-
|
589 |
-
|
590 |
-
|
591 |
-
|
|
|
|
|
|
|
|
|
|
|
592 |
|
593 |
-
|
594 |
-
st.markdown("""---""")
|
595 |
-
|
596 |
-
st.markdown("""---""")
|
597 |
-
|
598 |
-
if st.form_submit_button(label="Generate plot"):
|
599 |
-
st.session_state["step"] = 3
|
600 |
-
if (
|
601 |
-
not output["show_sums"]
|
602 |
-
or output["sum_tile_palette"] != output["palette"]
|
603 |
-
):
|
604 |
-
# Save settings as json
|
605 |
-
with open(design_settings_store_path, "w") as f:
|
606 |
-
json.dump(output, f)
|
607 |
-
if not output["place_x_axis_above"]:
|
608 |
-
selected_classes.reverse()
|
609 |
-
if reverse_class_order:
|
610 |
-
selected_classes.reverse()
|
611 |
|
612 |
-
|
613 |
-
|
614 |
-
|
615 |
-
|
616 |
-
|
617 |
-
|
618 |
-
|
619 |
-
|
620 |
-
|
621 |
-
|
622 |
-
|
623 |
-
|
624 |
-
|
625 |
-
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
626 |
|
627 |
-
return
|
628 |
|
629 |
|
630 |
# defaults: dict,
|
|
|
6 |
from text_sections import (
|
7 |
design_text,
|
8 |
)
|
9 |
+
from templates import get_templates
|
10 |
|
11 |
|
12 |
def _add_select_box(
|
|
|
32 |
)
|
33 |
|
34 |
|
35 |
+
templates = get_templates()
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
36 |
|
37 |
|
38 |
+
def select_settings():
|
|
|
|
|
|
|
|
|
|
|
39 |
def reset_output_callback():
|
40 |
+
st.session_state["selected_design_settings"].clear()
|
41 |
if "uploaded_design_settings" in st.session_state:
|
42 |
del st.session_state["uploaded_design_settings"]
|
43 |
+
st.session_state["step"] = 2
|
44 |
+
st.session_state["design_reset_mode"] = True
|
45 |
+
st.session_state["num_resets"] += 1
|
46 |
|
47 |
+
with st.expander("Templates"):
|
48 |
+
col1, col2, _ = st.columns([1, 1, 3])
|
49 |
+
with col1:
|
50 |
+
# Find template with num classes closest to
|
51 |
+
# the number of classes in the data
|
52 |
+
templates_available_num_classes = sorted(
|
53 |
+
set([d["num_classes"] for d in templates.values()])
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
54 |
)
|
55 |
+
closest_num_classes_distance = 99999
|
56 |
+
closest_num_classes_idx = -1
|
57 |
+
for idx, n in enumerate(templates_available_num_classes):
|
58 |
+
distance = abs(n - len(st.session_state["classes"]))
|
59 |
+
if distance < closest_num_classes_distance:
|
60 |
+
closest_num_classes_distance = distance
|
61 |
+
closest_num_classes_idx = idx
|
62 |
+
|
63 |
+
n_classes = st.selectbox(
|
64 |
+
"Number of classes",
|
65 |
+
index=closest_num_classes_idx + 1,
|
66 |
+
options=[-1] + templates_available_num_classes,
|
67 |
+
)
|
68 |
+
with col2:
|
69 |
+
st.write(" ")
|
70 |
+
st.write(" ")
|
71 |
+
has_sums = st.checkbox("Sum tiles", value=False)
|
72 |
+
|
73 |
+
filtered_templates = {
|
74 |
+
temp_name: temp
|
75 |
+
for temp_name, temp in templates.items()
|
76 |
+
if (n_classes == -1 or temp["num_classes"] == n_classes)
|
77 |
+
and temp["sums"] == has_sums
|
78 |
+
}
|
79 |
+
|
80 |
+
num_cols = 3
|
81 |
+
for i, (temp_name, template) in enumerate(filtered_templates.items()):
|
82 |
+
if i % num_cols == 0:
|
83 |
+
cols = st.columns(num_cols)
|
84 |
+
temp_image = Image.open(f"template_resources/{template['image']}")
|
85 |
+
with cols[i % 3]:
|
86 |
+
st.image(
|
87 |
+
temp_image,
|
88 |
+
clamp=False,
|
89 |
+
channels="RGB",
|
90 |
+
output_format="auto",
|
91 |
+
)
|
92 |
+
_, col2, _ = st.columns([5, 6, 5])
|
93 |
+
with col2:
|
94 |
+
if st.button("Select", key=temp_name.replace(" ", "_")):
|
95 |
+
with open(
|
96 |
+
"template_resources/" + template["settings"],
|
97 |
+
"r",
|
98 |
+
) as jfile:
|
99 |
+
st.session_state["uploaded_design_settings"] = json.load(
|
100 |
+
jfile
|
101 |
+
)
|
102 |
|
103 |
+
with st.expander("Upload settings"):
|
104 |
+
uploaded_settings_path = st.file_uploader(
|
105 |
+
"Upload design settings", type=["json"]
|
106 |
+
)
|
107 |
+
if st.button(label="Apply settings", on_click=reset_output_callback):
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
108 |
if uploaded_settings_path is not None:
|
|
|
|
|
|
|
|
|
|
|
109 |
st.session_state["uploaded_design_settings"] = json.load(
|
110 |
uploaded_settings_path
|
111 |
)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
112 |
|
113 |
+
_, col2, _ = st.columns([5, 2.5, 5])
|
114 |
with col2:
|
115 |
st.button("Reset design", on_click=reset_output_callback)
|
116 |
|
117 |
+
|
118 |
+
def design_section(
|
119 |
+
num_classes,
|
120 |
+
design_settings_store_path,
|
121 |
+
):
|
122 |
+
st.session_state["selected_design_settings"] = {}
|
123 |
+
|
124 |
+
st.markdown("---")
|
125 |
+
design_text()
|
126 |
+
select_settings()
|
127 |
+
|
128 |
def get_uploaded_setting(key, default, type_=None, options=None):
|
129 |
if (
|
130 |
"uploaded_design_settings" in st.session_state
|
|
|
146 |
return out
|
147 |
return default
|
148 |
|
149 |
+
if st.session_state["design_reset_mode"]:
|
150 |
+
if "form_placeholder" in st.session_state:
|
151 |
+
st.session_state["form_placeholder"].empty()
|
152 |
+
st.session_state["design_reset_mode"] = False
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
153 |
|
154 |
+
st.session_state["form_placeholder"] = st.empty()
|
155 |
+
with st.session_state["form_placeholder"].container():
|
156 |
+
with st.form(key=f"settings_form_{st.session_state['num_resets']}"):
|
157 |
+
col1, col2, col3 = st.columns([4, 2, 2])
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
158 |
with col1:
|
159 |
+
selected_classes = st.multiselect(
|
160 |
+
"Select classes (min=2, order is respected)",
|
161 |
+
options=st.session_state["classes"],
|
162 |
+
default=st.session_state["classes"],
|
163 |
+
help="Select the classes to create the confusion matrix for. "
|
164 |
+
"Any observation with either a target or prediction "
|
165 |
+
"of another class is excluded.",
|
166 |
)
|
167 |
+
# Reverse by default
|
168 |
+
selected_classes.reverse()
|
169 |
with col2:
|
170 |
+
st.write(" ")
|
171 |
+
st.write(" ")
|
172 |
+
reverse_class_order = st.checkbox(
|
173 |
+
"Reverse order",
|
174 |
+
value=False,
|
175 |
+
help="Reverse the order of the classes.",
|
176 |
)
|
177 |
|
178 |
+
# Color palette
|
179 |
+
col1, col2, col3, col4 = st.columns([4, 4, 2, 2])
|
180 |
with col1:
|
181 |
+
st.session_state["selected_design_settings"][
|
182 |
+
"palette"
|
183 |
+
] = _add_select_box(
|
184 |
+
key="palette",
|
185 |
+
label="Color Palette",
|
186 |
+
default="Blues",
|
187 |
+
options=[
|
188 |
+
"Blues",
|
189 |
+
"Greens",
|
190 |
+
"Oranges",
|
191 |
+
"Greys",
|
192 |
+
"Purples",
|
193 |
+
"Reds",
|
194 |
+
],
|
195 |
+
get_setting_fn=get_uploaded_setting,
|
196 |
+
type_=str,
|
197 |
+
help="Color of the tiles. Select a preset color palette or create a custom gradient. ",
|
198 |
)
|
199 |
with col2:
|
200 |
+
st.write("")
|
201 |
+
st.write(" ")
|
202 |
+
st.session_state["selected_design_settings"][
|
203 |
+
"palette_use_custom"
|
204 |
+
] = st.checkbox(
|
205 |
+
"Custom gradient",
|
206 |
+
value=False,
|
207 |
+
help="Use a custom gradient for coloring the tiles.",
|
208 |
)
|
209 |
+
with col3:
|
210 |
+
st.session_state["selected_design_settings"][
|
211 |
+
"palette_custom_low"
|
212 |
+
] = st.color_picker("Low color", value="#B1F9E8")
|
213 |
+
with col4:
|
214 |
+
st.session_state["selected_design_settings"][
|
215 |
+
"palette_custom_high"
|
216 |
+
] = st.color_picker("High color", value="#239895")
|
217 |
+
|
218 |
+
# Ask for output parameters
|
219 |
+
col1, col2, col3 = st.columns(3)
|
220 |
with col1:
|
221 |
+
st.session_state["selected_design_settings"]["width"] = st.number_input(
|
222 |
+
"Width (px)",
|
223 |
value=get_uploaded_setting(
|
224 |
+
key="width", default=1200 + 100 * (num_classes - 2), type_=int
|
225 |
),
|
226 |
+
step=50,
|
227 |
)
|
228 |
+
with col2:
|
229 |
+
st.session_state["selected_design_settings"][
|
230 |
+
"height"
|
231 |
+
] = st.number_input(
|
232 |
+
"Height (px)",
|
|
|
|
|
|
|
233 |
value=get_uploaded_setting(
|
234 |
+
key="width",
|
235 |
+
default=1200 + 100 * (num_classes - 2),
|
236 |
+
type_=int,
|
237 |
),
|
238 |
+
step=50,
|
|
|
|
|
239 |
)
|
240 |
+
with col3:
|
241 |
+
st.session_state["selected_design_settings"]["dpi"] = st.number_input(
|
242 |
+
"DPI (scaling)",
|
243 |
+
value=get_uploaded_setting(key="dpi", default=320, type_=int),
|
244 |
+
step=10,
|
245 |
+
help="While the output file *currently* won't have this DPI, "
|
246 |
+
"the DPI setting affects scaling of elements. ",
|
247 |
)
|
248 |
|
249 |
+
st.write(" ") # Slightly bigger gap between the two sections
|
250 |
+
col1, col2, col3 = st.columns(3)
|
|
|
251 |
with col1:
|
252 |
+
st.session_state["selected_design_settings"][
|
253 |
+
"show_counts"
|
254 |
+
] = st.checkbox(
|
255 |
+
"Show Counts",
|
256 |
value=get_uploaded_setting(
|
257 |
+
key="show_counts", default=True, type_=bool
|
258 |
),
|
259 |
)
|
260 |
+
with col2:
|
261 |
+
st.session_state["selected_design_settings"][
|
262 |
+
"show_normalized"
|
263 |
+
] = st.checkbox(
|
264 |
+
"Show Normalized (%)",
|
|
|
|
|
|
|
265 |
value=get_uploaded_setting(
|
266 |
+
key="show_normalized", default=True, type_=bool
|
267 |
),
|
268 |
)
|
269 |
+
with col3:
|
270 |
+
st.session_state["selected_design_settings"]["show_sums"] = st.checkbox(
|
271 |
+
"Show Sum Tiles",
|
272 |
value=get_uploaded_setting(
|
273 |
+
key="show_sums", default=False, type_=bool
|
274 |
),
|
275 |
+
help="Show extra row and column with the "
|
276 |
+
"totals for that row/column.",
|
277 |
)
|
278 |
+
|
279 |
+
st.markdown("""---""")
|
280 |
+
st.markdown("**Advanced**:")
|
281 |
+
|
282 |
+
with st.expander("Labels"):
|
283 |
+
col1, col2 = st.columns(2)
|
284 |
+
with col1:
|
285 |
+
st.session_state["selected_design_settings"][
|
286 |
+
"x_label"
|
287 |
+
] = st.text_input(
|
288 |
+
"x-axis",
|
289 |
value=get_uploaded_setting(
|
290 |
+
key="x_label", default="True Class", type_=str
|
291 |
+
),
|
|
|
|
|
|
|
292 |
)
|
293 |
+
with col2:
|
294 |
+
st.session_state["selected_design_settings"][
|
295 |
+
"y_label"
|
296 |
+
] = st.text_input(
|
297 |
+
"y-axis",
|
298 |
value=get_uploaded_setting(
|
299 |
+
key="y_label", default="Predicted Class", type_=str
|
300 |
+
),
|
|
|
|
|
|
|
301 |
)
|
|
|
|
|
302 |
|
303 |
+
st.markdown("---")
|
304 |
+
col1, col2 = st.columns(2)
|
305 |
+
with col1:
|
306 |
+
st.session_state["selected_design_settings"][
|
307 |
+
"title_label"
|
308 |
+
] = st.text_input(
|
309 |
+
"Title",
|
310 |
+
value=get_uploaded_setting(
|
311 |
+
key="title_label", default="", type_=str
|
312 |
+
),
|
313 |
+
)
|
314 |
+
with col2:
|
315 |
+
st.session_state["selected_design_settings"][
|
316 |
+
"caption_label"
|
317 |
+
] = st.text_input(
|
318 |
+
"Caption",
|
319 |
+
value=get_uploaded_setting(
|
320 |
+
key="caption_label", default="", type_=str
|
321 |
+
),
|
322 |
+
)
|
323 |
+
st.info(
|
324 |
+
"Note: When adding a title or caption, "
|
325 |
+
"you may need to adjust the height and "
|
326 |
+
"width of the plot as well."
|
|
|
|
|
|
|
|
|
327 |
)
|
328 |
|
329 |
+
with st.expander("Elements"):
|
330 |
+
col1, col2 = st.columns(2)
|
331 |
+
with col1:
|
332 |
+
st.session_state["selected_design_settings"][
|
333 |
+
"rotate_y_text"
|
334 |
+
] = st.checkbox(
|
335 |
+
"Rotate y-axis text",
|
336 |
+
value=get_uploaded_setting(
|
337 |
+
key="rotate_y_text", default=True, type_=bool
|
338 |
+
),
|
339 |
+
)
|
340 |
+
st.session_state["selected_design_settings"][
|
341 |
+
"place_x_axis_above"
|
342 |
+
] = st.checkbox(
|
343 |
+
"Place x-axis on top",
|
344 |
+
value=get_uploaded_setting(
|
345 |
+
key="place_x_axis_above", default=True, type_=bool
|
346 |
+
),
|
347 |
+
)
|
348 |
+
st.session_state["selected_design_settings"][
|
349 |
+
"counts_on_top"
|
350 |
+
] = st.checkbox(
|
351 |
+
"Counts on top",
|
352 |
+
value=get_uploaded_setting(
|
353 |
+
key="counts_on_top", default=False, type_=bool
|
354 |
+
),
|
355 |
+
help="Whether to switch the positions of the counts and normalized counts (%). "
|
356 |
+
"The counts become the big centralized numbers and the "
|
357 |
+
"normalized counts go below with a smaller font size.",
|
358 |
+
)
|
359 |
+
with col2:
|
360 |
+
st.session_state["selected_design_settings"][
|
361 |
+
"num_digits"
|
362 |
+
] = st.number_input(
|
363 |
+
"Digits",
|
364 |
+
value=get_uploaded_setting(
|
365 |
+
key="num_digits", default=2, type_=int
|
366 |
+
),
|
367 |
+
help="Number of digits to round percentages to.",
|
368 |
+
)
|
369 |
|
370 |
+
st.markdown("""---""")
|
|
|
|
|
|
|
|
|
|
|
371 |
|
372 |
+
col1, col2 = st.columns(2)
|
373 |
+
with col1:
|
374 |
+
st.write("Row and column percentages:")
|
375 |
+
st.session_state["selected_design_settings"][
|
376 |
+
"show_row_percentages"
|
377 |
+
] = st.checkbox(
|
378 |
+
"Show row percentages",
|
379 |
+
value=get_uploaded_setting(
|
380 |
+
key="show_row_percentages",
|
381 |
+
default=num_classes < 6,
|
382 |
+
type_=bool,
|
383 |
+
),
|
384 |
+
)
|
385 |
+
st.session_state["selected_design_settings"][
|
386 |
+
"show_col_percentages"
|
387 |
+
] = st.checkbox(
|
388 |
+
"Show column percentages",
|
389 |
+
value=get_uploaded_setting(
|
390 |
+
key="show_col_percentages",
|
391 |
+
default=num_classes < 6,
|
392 |
+
type_=bool,
|
393 |
+
),
|
394 |
+
)
|
395 |
+
st.session_state["selected_design_settings"][
|
396 |
+
"show_arrows"
|
397 |
+
] = st.checkbox(
|
398 |
+
"Show arrows",
|
399 |
+
value=get_uploaded_setting(
|
400 |
+
key="show_arrows", default=True, type_=bool
|
401 |
+
),
|
402 |
+
)
|
403 |
+
st.session_state["selected_design_settings"][
|
404 |
+
"diag_percentages_only"
|
405 |
+
] = st.checkbox(
|
406 |
+
"Diagonal row/column percentages only",
|
407 |
+
value=get_uploaded_setting(
|
408 |
+
key="diag_percentages_only",
|
409 |
+
default=False,
|
410 |
+
type_=bool,
|
411 |
+
),
|
412 |
+
)
|
413 |
+
with col2:
|
414 |
+
st.session_state["selected_design_settings"]["arrow_size"] = (
|
415 |
+
st.slider(
|
416 |
+
"Arrow size",
|
417 |
+
value=get_uploaded_setting(
|
418 |
+
key="arrow_size", default=0.048, type_=float
|
419 |
+
)
|
420 |
+
* 10,
|
421 |
+
min_value=0.03 * 10,
|
422 |
+
max_value=0.06 * 10,
|
423 |
+
step=0.001 * 10,
|
424 |
+
)
|
425 |
+
/ 10
|
426 |
+
)
|
427 |
+
st.session_state["selected_design_settings"][
|
428 |
+
"arrow_nudge_from_text"
|
429 |
+
] = (
|
430 |
+
st.slider(
|
431 |
+
"Arrow nudge from text",
|
432 |
+
value=get_uploaded_setting(
|
433 |
+
key="arrow_nudge_from_text",
|
434 |
+
default=0.065,
|
435 |
+
type_=float,
|
436 |
+
)
|
437 |
+
* 10,
|
438 |
+
min_value=0.00,
|
439 |
+
max_value=0.1 * 10,
|
440 |
+
step=0.001 * 10,
|
441 |
+
)
|
442 |
+
/ 10
|
443 |
+
)
|
444 |
|
445 |
+
with st.expander("Tiles"):
|
446 |
+
col1, col2 = st.columns(2)
|
447 |
+
with col1:
|
448 |
+
st.session_state["selected_design_settings"][
|
449 |
+
"intensity_by"
|
450 |
+
] = _add_select_box(
|
451 |
+
key="intensity_by",
|
452 |
+
label="Intensity based on",
|
453 |
+
default="Counts",
|
454 |
+
options=[
|
455 |
+
"Counts",
|
456 |
+
"Normalized (%)",
|
457 |
+
"Log Counts",
|
458 |
+
"Log2 Counts",
|
459 |
+
"Log10 Counts",
|
460 |
+
"Arcsinh Counts",
|
461 |
+
],
|
462 |
+
get_setting_fn=get_uploaded_setting,
|
463 |
+
type_=str,
|
464 |
+
)
|
465 |
+
with col2:
|
466 |
+
st.session_state["selected_design_settings"][
|
467 |
+
"darkness"
|
468 |
+
] = st.slider(
|
469 |
+
"Darkness",
|
470 |
+
min_value=0.0,
|
471 |
+
max_value=1.0,
|
472 |
+
value=get_uploaded_setting(
|
473 |
+
key="darkness", default=0.8, type_=float
|
474 |
+
),
|
475 |
+
step=0.01,
|
476 |
+
help="How dark the darkest colors should be, between 0 and 1, where 1 is darkest.",
|
477 |
+
)
|
478 |
|
479 |
+
st.markdown("""---""")
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
480 |
|
481 |
+
st.session_state["selected_design_settings"][
|
482 |
+
"show_tile_border"
|
483 |
+
] = st.checkbox(
|
484 |
+
"Add tile borders",
|
485 |
value=get_uploaded_setting(
|
486 |
+
key="show_tile_border", default=False, type_=bool
|
487 |
),
|
|
|
488 |
)
|
489 |
|
490 |
+
col1, col2, col3 = st.columns(3)
|
491 |
+
with col1:
|
492 |
+
st.session_state["selected_design_settings"][
|
493 |
+
"tile_border_color"
|
494 |
+
] = st.color_picker(
|
495 |
+
"Border color",
|
496 |
+
value=get_uploaded_setting(
|
497 |
+
key="tile_border_color",
|
498 |
+
default="#000000",
|
499 |
+
type_=str,
|
500 |
+
),
|
501 |
+
)
|
502 |
+
with col2:
|
503 |
+
st.session_state["selected_design_settings"][
|
504 |
+
"tile_border_size"
|
505 |
+
] = st.slider(
|
506 |
+
"Border size",
|
507 |
+
min_value=0.0,
|
508 |
+
max_value=3.0,
|
509 |
+
value=get_uploaded_setting(
|
510 |
+
key="tile_border_size", default=0.1, type_=float
|
511 |
+
),
|
512 |
+
step=0.01,
|
513 |
+
)
|
514 |
+
with col3:
|
515 |
+
st.session_state["selected_design_settings"][
|
516 |
+
"tile_border_linetype"
|
517 |
+
] = _add_select_box(
|
518 |
+
key="tile_border_linetype",
|
519 |
+
label="Border linetype",
|
520 |
+
default="solid",
|
521 |
+
options=[
|
522 |
+
"solid",
|
523 |
+
"dashed",
|
524 |
+
"dotted",
|
525 |
+
"dotdash",
|
526 |
+
"longdash",
|
527 |
+
"twodash",
|
528 |
+
],
|
529 |
+
get_setting_fn=get_uploaded_setting,
|
530 |
+
type_=str,
|
531 |
+
)
|
532 |
|
533 |
+
st.markdown("""---""")
|
534 |
+
|
535 |
+
st.write("Sum tile settings:")
|
536 |
+
|
537 |
+
col1, col2 = st.columns(2)
|
538 |
+
with col1:
|
539 |
+
st.session_state["selected_design_settings"][
|
540 |
+
"sum_tile_palette"
|
541 |
+
] = _add_select_box(
|
542 |
+
key="sum_tile_palette",
|
543 |
+
label="Color Palette",
|
544 |
+
default="Greens",
|
545 |
+
options=[
|
546 |
+
"Greens",
|
547 |
+
"Oranges",
|
548 |
+
"Greys",
|
549 |
+
"Purples",
|
550 |
+
"Reds",
|
551 |
+
"Blues",
|
552 |
+
],
|
553 |
+
get_setting_fn=get_uploaded_setting,
|
554 |
+
type_=str,
|
555 |
+
)
|
556 |
+
|
557 |
+
with col2:
|
558 |
+
st.session_state["selected_design_settings"][
|
559 |
+
"sum_tile_label"
|
560 |
+
] = st.text_input(
|
561 |
+
"Label",
|
562 |
+
value=get_uploaded_setting(
|
563 |
+
key="sum_tile_label", default="Ξ£", type_=str
|
564 |
+
),
|
565 |
+
key="sum_tiles_label",
|
566 |
+
)
|
567 |
+
|
568 |
+
# tile_fill = NULL,
|
569 |
+
# font_color = NULL,
|
570 |
+
# tile_border_color = NULL,
|
571 |
+
# tile_border_size = NULL,
|
572 |
+
# tile_border_linetype = NULL,
|
573 |
+
# tc_tile_fill = NULL,
|
574 |
+
# tc_font_color = NULL,
|
575 |
+
# tc_tile_border_color = NULL,
|
576 |
+
# tc_tile_border_size = NULL,
|
577 |
+
# tc_tile_border_linetype = NULL
|
578 |
+
|
579 |
+
with st.expander("Zero Counts"):
|
580 |
+
st.write("Special settings for tiles where the count is 0:")
|
581 |
+
col1, col2, col3 = st.columns(3)
|
582 |
+
with col1:
|
583 |
+
st.session_state["selected_design_settings"][
|
584 |
+
"show_zero_shading"
|
585 |
+
] = st.checkbox(
|
586 |
+
"Add shading",
|
587 |
+
value=get_uploaded_setting(
|
588 |
+
key="show_zero_shading", default=True, type_=bool
|
589 |
+
),
|
590 |
+
)
|
591 |
+
with col2:
|
592 |
+
st.session_state["selected_design_settings"][
|
593 |
+
"show_zero_text"
|
594 |
+
] = st.checkbox(
|
595 |
+
"Show text",
|
596 |
+
value=get_uploaded_setting(
|
597 |
+
key="show_zero_text", default=False, type_=bool
|
598 |
+
),
|
599 |
+
help="Whether to show counts, normalized (%), etc.",
|
600 |
+
)
|
601 |
+
with col3:
|
602 |
+
st.session_state["selected_design_settings"][
|
603 |
+
"show_zero_percentages"
|
604 |
+
] = st.checkbox(
|
605 |
+
"Show row/column percentages",
|
606 |
+
value=get_uploaded_setting(
|
607 |
+
key="show_zero_percentages",
|
608 |
+
default=False,
|
609 |
+
type_=bool,
|
610 |
+
),
|
611 |
+
help="Only relevant when row/column percentages are enabled.",
|
612 |
+
)
|
613 |
+
|
614 |
+
if True:
|
615 |
+
with st.expander("Fonts"):
|
616 |
+
# Specify available settings and defaults per font
|
617 |
+
font_types = {
|
618 |
+
"Top Font": {
|
619 |
+
"key_prefix": "font_top",
|
620 |
+
"description": "The big text in the middle (normalized (%) by default).",
|
621 |
+
"settings": {
|
622 |
+
"size": 4.3, # 2.8
|
623 |
+
"color": "#000000",
|
624 |
+
"alpha": 1.0,
|
625 |
+
"bold": False,
|
626 |
+
"italic": False,
|
627 |
+
},
|
628 |
},
|
629 |
+
"Bottom Font": {
|
630 |
+
"key_prefix": "font_bottom",
|
631 |
+
"description": "The text just below the top font (counts by default).",
|
632 |
+
"settings": {
|
633 |
+
"size": 2.8,
|
634 |
+
"color": "#000000",
|
635 |
+
"alpha": 1.0,
|
636 |
+
"bold": False,
|
637 |
+
"italic": False,
|
638 |
+
},
|
639 |
},
|
640 |
+
"Percentages Font": {
|
641 |
+
"key_prefix": "font_percentage",
|
642 |
+
"description": "The row and column percentages.",
|
643 |
+
"settings": {
|
644 |
+
"size": 2.35,
|
645 |
+
"color": "#000000",
|
646 |
+
"alpha": 0.85,
|
647 |
+
"bold": False,
|
648 |
+
"italic": True,
|
649 |
+
"suffix": "%",
|
650 |
+
"prefix": "",
|
651 |
+
},
|
652 |
},
|
653 |
+
"Normalized (%)": {
|
654 |
+
"key_prefix": "font_normalized",
|
655 |
+
"description": "Special settings for the normalized (%) text.",
|
656 |
+
"settings": {"suffix": "%", "prefix": ""},
|
657 |
+
},
|
658 |
+
"Counts": {
|
659 |
+
"key_prefix": "font_counts",
|
660 |
+
"description": "Special settings for the counts text.",
|
661 |
+
"settings": {"suffix": "", "prefix": ""},
|
662 |
+
},
|
663 |
+
}
|
664 |
+
|
665 |
+
for font_type_title, font_type_spec in font_types.items():
|
666 |
+
st.markdown(f"**{font_type_title}**")
|
667 |
+
st.markdown(font_type_spec["description"])
|
668 |
+
num_cols = 3
|
669 |
+
font_settings = create_font_settings(
|
670 |
+
key_prefix=font_type_spec["key_prefix"],
|
671 |
+
get_setting_fn=get_uploaded_setting,
|
672 |
+
settings_to_get=list(font_type_spec["settings"].keys()),
|
673 |
+
)
|
|
|
674 |
|
675 |
+
for i, (setting_name, setting_widget) in enumerate(
|
676 |
+
font_settings.items()
|
677 |
+
):
|
678 |
+
if i % num_cols == 0:
|
679 |
+
cols = st.columns(num_cols)
|
680 |
+
with cols[i % num_cols]:
|
681 |
+
default = font_type_spec["settings"][
|
682 |
+
setting_name[
|
683 |
+
len(font_type_spec["key_prefix"]) + 1 :
|
684 |
+
]
|
685 |
+
]
|
686 |
+
st.session_state["selected_design_settings"][
|
687 |
+
setting_name
|
688 |
+
] = setting_widget(k=setting_name, d=default)
|
689 |
+
|
690 |
+
if font_type_title != list(font_types.keys())[-1]:
|
691 |
+
st.markdown("""---""")
|
692 |
|
693 |
+
st.markdown("""---""")
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
694 |
|
695 |
+
if st.form_submit_button(label="Generate plot"):
|
696 |
+
st.session_state["step"] = 3
|
697 |
+
if (
|
698 |
+
not st.session_state["selected_design_settings"]["show_sums"]
|
699 |
+
or st.session_state["selected_design_settings"]["sum_tile_palette"]
|
700 |
+
!= st.session_state["selected_design_settings"]["palette"]
|
701 |
+
):
|
702 |
+
# Save settings as json
|
703 |
+
with open(design_settings_store_path, "w") as f:
|
704 |
+
json.dump(st.session_state["selected_design_settings"], f)
|
705 |
+
if not st.session_state["selected_design_settings"][
|
706 |
+
"place_x_axis_above"
|
707 |
+
]:
|
708 |
+
selected_classes.reverse()
|
709 |
+
if reverse_class_order:
|
710 |
+
selected_classes.reverse()
|
711 |
+
|
712 |
+
design_ready = False
|
713 |
+
if st.session_state["step"] >= 3:
|
714 |
+
design_ready = True
|
715 |
+
if (
|
716 |
+
st.session_state["selected_design_settings"]["show_sums"]
|
717 |
+
and st.session_state["selected_design_settings"]["sum_tile_palette"]
|
718 |
+
== st.session_state["selected_design_settings"]["palette"]
|
719 |
+
):
|
720 |
+
st.error(
|
721 |
+
"The color palettes (background colors) "
|
722 |
+
"for the tiles and sum tiles are identical. "
|
723 |
+
"Please select a different color palette for "
|
724 |
+
"the sum tiles under **Tiles** >> *Sum tile settings*."
|
725 |
+
)
|
726 |
+
design_ready = False
|
727 |
+
if len(selected_classes) < 2:
|
728 |
+
st.error("At least 2 classes must be selected.")
|
729 |
+
design_ready = False
|
730 |
|
731 |
+
return design_ready, selected_classes
|
732 |
|
733 |
|
734 |
# defaults: dict,
|
plot.R
CHANGED
@@ -201,15 +201,6 @@ confusion_matrix <- dplyr::filter(
|
|
201 |
|
202 |
# Plotting settings
|
203 |
|
204 |
-
# Sum tiles
|
205 |
-
sums_settings <- sum_tile_settings()
|
206 |
-
if (isTRUE(design_settings$show_sums)) {
|
207 |
-
sums_settings <- sum_tile_settings(
|
208 |
-
palette = design_settings$sum_tile_palette,
|
209 |
-
label = design_settings$sum_tile_label
|
210 |
-
)
|
211 |
-
}
|
212 |
-
|
213 |
build_fontface <- function(bold, italic) {
|
214 |
dplyr::case_when(
|
215 |
isTRUE(bold) && isTRUE(italic) ~ "bold.italic",
|
@@ -296,6 +287,18 @@ if (isTRUE(design_settings$palette_use_custom)) {
|
|
296 |
)
|
297 |
}
|
298 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
299 |
confusion_matrix_plot <- tryCatch(
|
300 |
{
|
301 |
cvms::plot_confusion_matrix(
|
|
|
201 |
|
202 |
# Plotting settings
|
203 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
204 |
build_fontface <- function(bold, italic) {
|
205 |
dplyr::case_when(
|
206 |
isTRUE(bold) && isTRUE(italic) ~ "bold.italic",
|
|
|
287 |
)
|
288 |
}
|
289 |
|
290 |
+
# Sum tiles
|
291 |
+
sums_settings <- sum_tile_settings()
|
292 |
+
if (isTRUE(design_settings$show_sums)) {
|
293 |
+
sums_settings <- sum_tile_settings(
|
294 |
+
palette = design_settings$sum_tile_palette,
|
295 |
+
label = design_settings$sum_tile_label,
|
296 |
+
tile_border_color = tile_border_color,
|
297 |
+
tile_border_size = design_settings$tile_border_size,
|
298 |
+
tile_border_linetype = design_settings$tile_border_linetype
|
299 |
+
)
|
300 |
+
}
|
301 |
+
|
302 |
confusion_matrix_plot <- tryCatch(
|
303 |
{
|
304 |
cvms::plot_confusion_matrix(
|
template_resources/blues_nc2_1.1.png
ADDED
template_resources/blues_nc2_sums_1.1.png
ADDED
template_resources/blues_nc3_1.1.png
ADDED
template_resources/blues_nc3_sums_1.1.png
ADDED
template_resources/design_settings.blues_nc2_1.1.json
ADDED
@@ -0,0 +1 @@
|
|
|
|
|
1 |
+
{"palette": "Blues", "palette_use_custom": false, "palette_custom_low": "#B1F9E8", "palette_custom_high": "#239895", "width": 1100, "height": 1100, "dpi": 320, "show_counts": true, "show_normalized": true, "show_sums": false, "x_label": "True Class", "y_label": "Predicted Class", "title_label": "", "caption_label": "", "rotate_y_text": true, "place_x_axis_above": true, "counts_on_top": false, "num_digits": 2, "show_row_percentages": true, "show_col_percentages": true, "show_arrows": true, "diag_percentages_only": false, "arrow_size": 0.048, "arrow_nudge_from_text": 0.065, "intensity_by": "Counts", "darkness": 0.8, "show_tile_border": false, "tile_border_color": "#000000", "tile_border_size": 0.1, "tile_border_linetype": "solid", "sum_tile_palette": "Greens", "sum_tile_label": "Total", "show_zero_shading": true, "show_zero_text": true, "show_zero_percentages": false, "font_top_color": "#000000", "font_top_bold": false, "font_top_italic": false, "font_top_size": 4.3, "font_top_alpha": 1.0, "font_bottom_color": "#000000", "font_bottom_bold": false, "font_bottom_italic": false, "font_bottom_size": 2.8, "font_bottom_alpha": 1.0, "font_percentage_color": "#000000", "font_percentage_bold": false, "font_percentage_italic": true, "font_percentage_size": 2.35, "font_percentage_alpha": 0.85, "font_percentage_prefix": "", "font_percentage_suffix": "%", "font_normalized_prefix": "", "font_normalized_suffix": "%", "font_counts_prefix": "", "font_counts_suffix": ""}
|
template_resources/design_settings.blues_nc2_sums_1.1.json
ADDED
@@ -0,0 +1 @@
|
|
|
|
|
1 |
+
{"palette": "Blues", "palette_use_custom": false, "palette_custom_low": "#B1F9E8", "palette_custom_high": "#239895", "width": 1300, "height": 1300, "dpi": 320, "show_counts": true, "show_normalized": true, "show_sums": true, "x_label": "True Class", "y_label": "Predicted Class", "title_label": "", "caption_label": "", "rotate_y_text": true, "place_x_axis_above": true, "counts_on_top": false, "num_digits": 2, "show_row_percentages": true, "show_col_percentages": true, "show_arrows": true, "diag_percentages_only": false, "arrow_size": 0.048, "arrow_nudge_from_text": 0.065, "intensity_by": "Counts", "darkness": 0.8, "show_tile_border": false, "tile_border_color": "#000000", "tile_border_size": 0.1, "tile_border_linetype": "solid", "sum_tile_palette": "Greens", "sum_tile_label": "Total", "show_zero_shading": true, "show_zero_text": true, "show_zero_percentages": false, "font_top_color": "#000000", "font_top_bold": false, "font_top_italic": false, "font_top_size": 4.3, "font_top_alpha": 1.0, "font_bottom_color": "#000000", "font_bottom_bold": false, "font_bottom_italic": false, "font_bottom_size": 2.8, "font_bottom_alpha": 1.0, "font_percentage_color": "#000000", "font_percentage_bold": false, "font_percentage_italic": true, "font_percentage_size": 2.35, "font_percentage_alpha": 0.85, "font_percentage_prefix": "", "font_percentage_suffix": "%", "font_normalized_prefix": "", "font_normalized_suffix": "%", "font_counts_prefix": "", "font_counts_suffix": ""}
|
template_resources/design_settings.blues_nc3_1.1.json
ADDED
@@ -0,0 +1 @@
|
|
|
|
|
1 |
+
{"palette": "Blues", "palette_use_custom": false, "palette_custom_low": "#B1F9E8", "palette_custom_high": "#239895", "width": 1300, "height": 1300, "dpi": 320, "show_counts": true, "show_normalized": true, "show_sums": false, "x_label": "True Class", "y_label": "Predicted Class", "title_label": "", "caption_label": "", "rotate_y_text": true, "place_x_axis_above": true, "counts_on_top": false, "num_digits": 2, "show_row_percentages": true, "show_col_percentages": true, "show_arrows": true, "diag_percentages_only": false, "arrow_size": 0.048, "arrow_nudge_from_text": 0.065, "intensity_by": "Counts", "darkness": 0.8, "show_tile_border": false, "tile_border_color": "#000000", "tile_border_size": 0.1, "tile_border_linetype": "solid", "sum_tile_palette": "Greens", "sum_tile_label": "Total", "show_zero_shading": true, "show_zero_text": true, "show_zero_percentages": false, "font_top_color": "#000000", "font_top_bold": false, "font_top_italic": false, "font_top_size": 4.3, "font_top_alpha": 1.0, "font_bottom_color": "#000000", "font_bottom_bold": false, "font_bottom_italic": false, "font_bottom_size": 2.8, "font_bottom_alpha": 1.0, "font_percentage_color": "#000000", "font_percentage_bold": false, "font_percentage_italic": true, "font_percentage_size": 2.35, "font_percentage_alpha": 0.85, "font_percentage_prefix": "", "font_percentage_suffix": "%", "font_normalized_prefix": "", "font_normalized_suffix": "%", "font_counts_prefix": "", "font_counts_suffix": ""}
|
template_resources/design_settings.blues_nc3_sums_1.1.json
ADDED
@@ -0,0 +1 @@
|
|
|
|
|
1 |
+
{"palette": "Blues", "palette_use_custom": false, "palette_custom_low": "#B1F9E8", "palette_custom_high": "#239895", "width": 1425, "height": 1425, "dpi": 320, "show_counts": true, "show_normalized": true, "show_sums": true, "x_label": "True Class", "y_label": "Predicted Class", "title_label": "", "caption_label": "", "rotate_y_text": true, "place_x_axis_above": true, "counts_on_top": false, "num_digits": 2, "show_row_percentages": true, "show_col_percentages": true, "show_arrows": true, "diag_percentages_only": false, "arrow_size": 0.048, "arrow_nudge_from_text": 0.065, "intensity_by": "Counts", "darkness": 0.8, "show_tile_border": false, "tile_border_color": "#000000", "tile_border_size": 0.1, "tile_border_linetype": "solid", "sum_tile_palette": "Greens", "sum_tile_label": "Total", "show_zero_shading": true, "show_zero_text": true, "show_zero_percentages": false, "font_top_color": "#000000", "font_top_bold": false, "font_top_italic": false, "font_top_size": 4.3, "font_top_alpha": 1.0, "font_bottom_color": "#000000", "font_bottom_bold": false, "font_bottom_italic": false, "font_bottom_size": 2.8, "font_bottom_alpha": 1.0, "font_percentage_color": "#000000", "font_percentage_bold": false, "font_percentage_italic": true, "font_percentage_size": 2.35, "font_percentage_alpha": 0.85, "font_percentage_prefix": "", "font_percentage_suffix": "%", "font_normalized_prefix": "", "font_normalized_suffix": "%", "font_counts_prefix": "", "font_counts_suffix": ""}
|
templates/design_settings.grey_nc2_1.1.json β template_resources/design_settings.greys_nc2_1.1.json
RENAMED
@@ -1 +1 @@
|
|
1 |
-
{"palette": "Greys", "width": 1150, "height": 1150, "dpi": 320, "show_counts": true, "show_normalized": true, "show_sums": false, "x_label": "True Class", "y_label": "Predicted Class", "title_label": "", "caption_label": "", "rotate_y_text": true, "place_x_axis_above": true, "counts_on_top": false, "num_digits": 2, "show_row_percentages": true, "show_col_percentages": true, "show_arrows": true, "diag_percentages_only": false, "arrow_size": 0.048, "arrow_nudge_from_text": 0.065, "intensity_by": "Counts", "darkness": 0.
|
|
|
1 |
+
{"palette": "Greys", "width": 1150, "height": 1150, "dpi": 320, "show_counts": true, "show_normalized": true, "show_sums": false, "x_label": "True Class", "y_label": "Predicted Class", "title_label": "", "caption_label": "", "rotate_y_text": true, "place_x_axis_above": true, "counts_on_top": false, "num_digits": 2, "show_row_percentages": true, "show_col_percentages": true, "show_arrows": true, "diag_percentages_only": false, "arrow_size": 0.048, "arrow_nudge_from_text": 0.065, "intensity_by": "Counts", "darkness": 0.75, "show_tile_border": true, "tile_border_color": "#000000", "tile_border_size": 0.05, "tile_border_linetype": "longdash", "sum_tile_palette": "Purples", "sum_tile_label": "Total", "show_zero_shading": true, "show_zero_text": true, "show_zero_percentages": false, "font_top_color": "#000000", "font_top_bold": false, "font_top_italic": false, "font_top_size": 4.3, "font_top_alpha": 1.0, "font_bottom_color": "#000000", "font_bottom_bold": false, "font_bottom_italic": false, "font_bottom_size": 2.8, "font_bottom_alpha": 1.0, "font_percentage_color": "#000000", "font_percentage_bold": false, "font_percentage_italic": true, "font_percentage_size": 2.35, "font_percentage_alpha": 0.85, "font_percentage_prefix": "", "font_percentage_suffix": "%", "font_normalized_prefix": "", "font_normalized_suffix": "%", "font_counts_prefix": "", "font_counts_suffix": ""}
|
templates/design_settings.grey_nc3_1.1.json β template_resources/design_settings.greys_nc2_sums_1.1.json
RENAMED
@@ -1 +1 @@
|
|
1 |
-
{"palette": "Greys", "width": 1300, "height": 1300, "dpi": 320, "show_counts": true, "show_normalized": true, "show_sums":
|
|
|
1 |
+
{"palette": "Greys", "width": 1300, "height": 1300, "dpi": 320, "show_counts": true, "show_normalized": true, "show_sums": true, "x_label": "True Class", "y_label": "Predicted Class", "title_label": "", "caption_label": "", "rotate_y_text": true, "place_x_axis_above": true, "counts_on_top": false, "num_digits": 2, "show_row_percentages": true, "show_col_percentages": true, "show_arrows": true, "diag_percentages_only": false, "arrow_size": 0.048, "arrow_nudge_from_text": 0.065, "intensity_by": "Counts", "darkness": 0.75, "show_tile_border": true, "tile_border_color": "#000000", "tile_border_size": 0.05, "tile_border_linetype": "longdash", "sum_tile_palette": "Purples", "sum_tile_label": "Total", "show_zero_shading": true, "show_zero_text": true, "show_zero_percentages": false, "font_top_color": "#000000", "font_top_bold": false, "font_top_italic": false, "font_top_size": 4.3, "font_top_alpha": 1.0, "font_bottom_color": "#000000", "font_bottom_bold": false, "font_bottom_italic": false, "font_bottom_size": 2.8, "font_bottom_alpha": 1.0, "font_percentage_color": "#000000", "font_percentage_bold": false, "font_percentage_italic": true, "font_percentage_size": 2.35, "font_percentage_alpha": 0.85, "font_percentage_prefix": "", "font_percentage_suffix": "%", "font_normalized_prefix": "", "font_normalized_suffix": "%", "font_counts_prefix": "", "font_counts_suffix": ""}
|
template_resources/design_settings.greys_nc3_1.1.json
ADDED
@@ -0,0 +1 @@
|
|
|
|
|
1 |
+
{"palette": "Greys", "width": 1300, "height": 1300, "dpi": 320, "show_counts": true, "show_normalized": true, "show_sums": false, "x_label": "True Class", "y_label": "Predicted Class", "title_label": "", "caption_label": "", "rotate_y_text": true, "place_x_axis_above": true, "counts_on_top": false, "num_digits": 2, "show_row_percentages": true, "show_col_percentages": true, "show_arrows": true, "diag_percentages_only": false, "arrow_size": 0.048, "arrow_nudge_from_text": 0.065, "intensity_by": "Counts", "darkness": 0.75, "show_tile_border": true, "tile_border_color": "#000000", "tile_border_size": 0.05, "tile_border_linetype": "longdash", "sum_tile_palette": "Purples", "sum_tile_label": "Total", "show_zero_shading": true, "show_zero_text": true, "show_zero_percentages": false, "font_top_color": "#000000", "font_top_bold": false, "font_top_italic": false, "font_top_size": 4.3, "font_top_alpha": 1.0, "font_bottom_color": "#000000", "font_bottom_bold": false, "font_bottom_italic": false, "font_bottom_size": 2.8, "font_bottom_alpha": 1.0, "font_percentage_color": "#000000", "font_percentage_bold": false, "font_percentage_italic": true, "font_percentage_size": 2.35, "font_percentage_alpha": 0.85, "font_percentage_prefix": "", "font_percentage_suffix": "%", "font_normalized_prefix": "", "font_normalized_suffix": "%", "font_counts_prefix": "", "font_counts_suffix": ""}
|
template_resources/design_settings.greys_nc3_sums_1.1.json
ADDED
@@ -0,0 +1 @@
|
|
|
|
|
1 |
+
{"palette": "Greys", "palette_use_custom": false, "palette_custom_low": "#B1F9E8", "palette_custom_high": "#239895", "width": 1425, "height": 1425, "dpi": 320, "show_counts": true, "show_normalized": true, "show_sums": true, "x_label": "True Class", "y_label": "Predicted Class", "title_label": "", "caption_label": "", "rotate_y_text": true, "place_x_axis_above": true, "counts_on_top": false, "num_digits": 2, "show_row_percentages": true, "show_col_percentages": true, "show_arrows": true, "diag_percentages_only": false, "arrow_size": 0.048, "arrow_nudge_from_text": 0.065, "intensity_by": "Counts", "darkness": 0.75, "show_tile_border": true, "tile_border_color": "#000000", "tile_border_size": 0.05, "tile_border_linetype": "longdash", "sum_tile_palette": "Purples", "sum_tile_label": "Total", "show_zero_shading": true, "show_zero_text": true, "show_zero_percentages": false, "font_top_color": "#000000", "font_top_bold": false, "font_top_italic": false, "font_top_size": 4.3, "font_top_alpha": 1.0, "font_bottom_color": "#000000", "font_bottom_bold": false, "font_bottom_italic": false, "font_bottom_size": 2.8, "font_bottom_alpha": 1.0, "font_percentage_color": "#000000", "font_percentage_bold": false, "font_percentage_italic": true, "font_percentage_size": 2.35, "font_percentage_alpha": 0.85, "font_percentage_prefix": "", "font_percentage_suffix": "%", "font_normalized_prefix": "", "font_normalized_suffix": "%", "font_counts_prefix": "", "font_counts_suffix": ""}
|
template_resources/greys_nc2_1.1.png
ADDED
template_resources/greys_nc2_sums_1.1.png
ADDED
template_resources/greys_nc3_1.1.png
ADDED
template_resources/greys_nc3_sums_1.1.png
ADDED
templates.py
ADDED
@@ -0,0 +1,97 @@
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1 |
+
def get_templates():
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2 |
+
temps = Templates()
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3 |
+
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4 |
+
# Blues
|
5 |
+
temps.add(
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6 |
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name="Blues 2-Class",
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7 |
+
num_classes=2,
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8 |
+
sums=False,
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9 |
+
settings_path="design_settings.blues_nc2_1.1.json",
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10 |
+
image_path="blues_nc2_1.1.png",
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11 |
+
collection="Blues 1",
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12 |
+
)
|
13 |
+
temps.add(
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14 |
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name="Blues 3-Class",
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15 |
+
num_classes=3,
|
16 |
+
sums=False,
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17 |
+
settings_path="design_settings.blues_nc3_1.1.json",
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18 |
+
image_path="blues_nc3_1.1.png",
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19 |
+
collection="Blues 1",
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20 |
+
)
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21 |
+
temps.add(
|
22 |
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name="Blues 2-Class w/ Sums",
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23 |
+
num_classes=2,
|
24 |
+
sums=True,
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25 |
+
settings_path="design_settings.blues_nc2_sums_1.1.json",
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26 |
+
image_path="blues_nc2_sums_1.1.png",
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27 |
+
collection="Blues 1",
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28 |
+
)
|
29 |
+
temps.add(
|
30 |
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name="Blues 3-Class w/ Sums",
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31 |
+
num_classes=3,
|
32 |
+
sums=True,
|
33 |
+
settings_path="design_settings.blues_nc3_sums_1.1.json",
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34 |
+
image_path="blues_nc3_sums_1.1.png",
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35 |
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collection="Blues 1",
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36 |
+
)
|
37 |
+
|
38 |
+
# Greys
|
39 |
+
temps.add(
|
40 |
+
name="Greys 2-Class",
|
41 |
+
num_classes=2,
|
42 |
+
sums=False,
|
43 |
+
settings_path="design_settings.greys_nc2_1.1.json",
|
44 |
+
image_path="greys_nc2_1.1.png",
|
45 |
+
collection="Greys 1",
|
46 |
+
)
|
47 |
+
temps.add(
|
48 |
+
name="Greys 3-Class",
|
49 |
+
num_classes=3,
|
50 |
+
sums=False,
|
51 |
+
settings_path="design_settings.greys_nc3_1.1.json",
|
52 |
+
image_path="greys_nc3_1.1.png",
|
53 |
+
collection="Greys 1",
|
54 |
+
)
|
55 |
+
temps.add(
|
56 |
+
name="Greys 2-Class w/ Sums",
|
57 |
+
num_classes=2,
|
58 |
+
sums=True,
|
59 |
+
settings_path="design_settings.greys_nc2_sums_1.1.json",
|
60 |
+
image_path="greys_nc2_sums_1.1.png",
|
61 |
+
collection="Greys 1",
|
62 |
+
)
|
63 |
+
temps.add(
|
64 |
+
name="Greys 3-Class w/ Sums",
|
65 |
+
num_classes=3,
|
66 |
+
sums=True,
|
67 |
+
settings_path="design_settings.greys_nc3_sums_1.1.json",
|
68 |
+
image_path="greys_nc3_sums_1.1.png",
|
69 |
+
collection="Greys 1",
|
70 |
+
)
|
71 |
+
|
72 |
+
return temps.get_templates()
|
73 |
+
|
74 |
+
|
75 |
+
class Templates:
|
76 |
+
def __init__(self) -> None:
|
77 |
+
self.templates = {}
|
78 |
+
|
79 |
+
def get_templates(self) -> dict:
|
80 |
+
return self.templates
|
81 |
+
|
82 |
+
def add(
|
83 |
+
self,
|
84 |
+
name: str,
|
85 |
+
num_classes: int,
|
86 |
+
sums: bool,
|
87 |
+
settings_path: str,
|
88 |
+
image_path: str,
|
89 |
+
collection: str,
|
90 |
+
) -> None:
|
91 |
+
self.templates[name] = {
|
92 |
+
"collection": collection,
|
93 |
+
"num_classes": num_classes,
|
94 |
+
"sums": sums,
|
95 |
+
"settings": settings_path,
|
96 |
+
"image": image_path,
|
97 |
+
}
|
templates/design_settings.grey_nc2_sums_1.1.json
DELETED
@@ -1 +0,0 @@
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|
1 |
-
{"palette": "Greys", "width": 1300, "height": 1300, "dpi": 320, "show_counts": true, "show_normalized": true, "show_sums": true, "x_label": "True Class", "y_label": "Predicted Class", "title_label": "", "caption_label": "", "rotate_y_text": true, "place_x_axis_above": true, "counts_on_top": false, "num_digits": 2, "show_row_percentages": true, "show_col_percentages": true, "show_arrows": true, "diag_percentages_only": false, "arrow_size": 0.048, "arrow_nudge_from_text": 0.065, "intensity_by": "Counts", "darkness": 0.8, "show_tile_border": true, "tile_border_color": "#000000", "tile_border_size": 0.05, "tile_border_linetype": "longdash", "sum_tile_palette": "Purples", "sum_tile_label": "Total", "show_zero_shading": true, "show_zero_text": true, "show_zero_percentages": false, "font_top_color": "#000000", "font_top_bold": false, "font_top_italic": false, "font_top_size": 4.3, "font_top_alpha": 1.0, "font_bottom_color": "#000000", "font_bottom_bold": false, "font_bottom_italic": false, "font_bottom_size": 2.8, "font_bottom_alpha": 1.0, "font_percentage_color": "#000000", "font_percentage_bold": false, "font_percentage_italic": true, "font_percentage_size": 2.35, "font_percentage_alpha": 0.85, "font_percentage_prefix": "", "font_percentage_suffix": "%", "font_normalized_prefix": "", "font_normalized_suffix": "%", "font_counts_prefix": "", "font_counts_suffix": ""}
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|
templates/grey_nc2_1.1.jpg
DELETED
Binary file (109 kB)
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templates/grey_nc2_sums_1.1.jpg
DELETED
Binary file (155 kB)
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templates/grey_nc3_1.1.jpg
DELETED
Binary file (182 kB)
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|
text_sections.py
CHANGED
@@ -193,7 +193,8 @@ def design_text():
|
|
193 |
st.subheader("Design your plot")
|
194 |
st.write("This is where you customize the design of your confusion matrix plot.")
|
195 |
st.markdown(
|
196 |
-
"We suggest you go directly to `Generate plot` to see the starting point. Then go back and tweak to your liking!"
|
|
|
197 |
)
|
198 |
st.markdown(
|
199 |
"The *width* and *height* settings are usually necessary to adjust as they "
|
@@ -201,7 +202,6 @@ def design_text():
|
|
201 |
"time for a start."
|
202 |
)
|
203 |
st.write(
|
204 |
-
"
|
205 |
-
"you can start by uploading the json file. "
|
206 |
-
"Otherwise, get designing!"
|
207 |
)
|
|
|
|
193 |
st.subheader("Design your plot")
|
194 |
st.write("This is where you customize the design of your confusion matrix plot.")
|
195 |
st.markdown(
|
196 |
+
"We suggest you go directly to `Generate plot` to see the starting point. Then go back and tweak to your liking! "
|
197 |
+
"You can also select one of the templates or upload previously saved design settings."
|
198 |
)
|
199 |
st.markdown(
|
200 |
"The *width* and *height* settings are usually necessary to adjust as they "
|
|
|
202 |
"time for a start."
|
203 |
)
|
204 |
st.write(
|
205 |
+
"Get designing!"
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|
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|
|
206 |
)
|
207 |
+
st.write("")
|