libokj commited on
Commit
57ed866
·
1 Parent(s): f4c200d

Update app.py

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Files changed (1) hide show
  1. app.py +6 -6
app.py CHANGED
@@ -410,12 +410,12 @@ def validate_columns(df, mandatory_cols):
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  def process_target_fasta(sequence):
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  try:
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  if sequence:
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- # lines = sequence.strip().split("\n")
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- # if lines[0].startswith(">"):
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- # lines = lines[1:]
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- # return ''.join(lines).split(">")[0]
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- record = list(SeqIO.parse(io.StringIO(sequence), "fasta"))[0]
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- return str(record.seq)
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  else:
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  raise ValueError('Empty FASTA sequence.')
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  except Exception as e:
 
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  def process_target_fasta(sequence):
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  try:
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  if sequence:
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+ lines = sequence.strip().split("\n")
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+ if lines[0].startswith(">"):
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+ lines = lines[1:]
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+ return ''.join(lines).split(">")[0]
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+ # record = list(SeqIO.parse(io.StringIO(sequence), "fasta"))[0]
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+ # return str(record.seq)
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  else:
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  raise ValueError('Empty FASTA sequence.')
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  except Exception as e: