GERNET Enody
commited on
Commit
•
83fe45d
1
Parent(s):
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Add files via upload
Browse files- README.md +1 -0
- requirements.txt +76 -72
README.md
CHANGED
@@ -65,6 +65,7 @@ You can also put a symlink to a pdf file (see `data/test_pdf.tsv` for an example
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```
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Report_id_X Doe John Example.pdf
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```
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Outputs will be placed in the `results` folder according to the file extension, using first three columns in filename.
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- The deidentify report will be generated and placed in the `results/Reports` folder.
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```
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Report_id_X Doe John Example.pdf
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```
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+
You'll need poppler installed in your os to use OCR on pdf file (https://pdf2image.readthedocs.io/en/latest/installation.html)
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Outputs will be placed in the `results` folder according to the file extension, using first three columns in filename.
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- The deidentify report will be generated and placed in the `results/Reports` folder.
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requirements.txt
CHANGED
@@ -1,43 +1,45 @@
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altair==5.
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argostranslate==1.9.
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attrs==23.
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backports-cached-property==1.0.1 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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5 |
-
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blinker==1.7.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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blis==0.7.11 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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cachetools==5.3.
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catalogue==2.0.10 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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10 |
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certifi==
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charset-normalizer==3.3.2 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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click==8.1.7 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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cloudpathlib==0.
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colorama==0.4.6 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12" and (platform_system == "Windows" or sys_platform == "win32")
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confection==0.1.
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ctranslate2==3.
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cymem==2.0.8 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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filelock==3.
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fsspec==
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gitdb==4.0.11 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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gitpython==3.1.
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huggingface-hub==0.
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23 |
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idna==3.
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24 |
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importlib-
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-
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26 |
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jinja2==3.1.
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27 |
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joblib==1.
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28 |
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jsonschema-specifications==2023.
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29 |
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jsonschema==4.
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30 |
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langcodes==3.
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markdown-it-py==3.0.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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32 |
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markupsafe==2.1.
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mdurl==0.1.2 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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memory-profiler==0.61.0 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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mpmath==1.3.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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murmurhash==1.0.10 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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networkx==3.1 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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nltk==3.8.1 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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numpy==1.24.4 ; python_version >= "3.8" and python_version < "3.9"
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numpy==1.26.
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nvidia-cublas-cu12==12.1.3.1 ; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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nvidia-cuda-cupti-cu12==12.1.105 ; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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nvidia-cuda-nvrtc-cu12==12.1.105 ; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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@@ -47,67 +49,69 @@ nvidia-cufft-cu12==11.0.2.54 ; platform_system == "Linux" and platform_machine =
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nvidia-curand-cu12==10.3.2.106 ; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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nvidia-cusolver-cu12==11.4.5.107 ; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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nvidia-cusparse-cu12==12.1.0.106 ; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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-
nvidia-nccl-cu12==2.
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nvidia-nvjitlink-cu12==12.
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nvidia-nvtx-cu12==12.1.105 ; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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packaging==
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pandas==1.5.3 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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-
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-
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pkgutil-resolve-name==1.3.10 ; python_version >= "3.8" and python_version < "3.9"
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preshed==3.0.9 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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presidio-analyzer==2.2.
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presidio-anonymizer==2.2.
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protobuf==3.20.3 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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psutil==
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pyarrow==
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pycryptodome==3.
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pydantic==1.10.13 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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pydeck==0.
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pygments==2.
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pyhpo==3.1.5 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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-
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-
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pyyaml==6.0.1 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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referencing==0.
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regex==
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requests-file==1.
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requests==2.
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rich==13.7.
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rpds-py==0.
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sacremoses==0.0.53 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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safetensors==0.4.
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sentencepiece==0.
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setuptools==
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six==1.16.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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smart-open==
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smmap==5.0.1 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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spacy-legacy==3.0.12 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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spacy-loggers==1.0.5 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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spacy==3.7.
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srsly==2.4.8 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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stanza==1.1.1 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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streamlit==1.
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sympy==1.
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-
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-
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toml==0.10.2 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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toolz==0.12.
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torch==2.
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tornado==6.
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tqdm==4.66.
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transformers==4.
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triton==2.1
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typer==0.
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typing-extensions==4.
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-
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107 |
-
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108 |
-
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109 |
-
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-
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-
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112 |
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weasel==0.3.4 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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113 |
-
zipp==3.17.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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1 |
+
altair==5.3.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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2 |
+
argostranslate==1.9.6 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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3 |
+
attrs==23.2.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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4 |
backports-cached-property==1.0.1 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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5 |
+
blinker==1.8.2 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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6 |
blis==0.7.11 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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7 |
+
cachetools==5.3.3 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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8 |
catalogue==2.0.10 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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9 |
+
certifi==2024.7.4 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
10 |
charset-normalizer==3.3.2 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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11 |
click==8.1.7 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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12 |
+
cloudpathlib==0.18.1 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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13 |
colorama==0.4.6 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12" and (platform_system == "Windows" or sys_platform == "win32")
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14 |
+
confection==0.1.5 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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15 |
+
ctranslate2==4.3.1 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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16 |
cymem==2.0.8 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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17 |
+
filelock==3.15.4 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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18 |
+
fsspec==2024.6.1 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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19 |
gitdb==4.0.11 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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20 |
+
gitpython==3.1.43 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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21 |
+
huggingface-hub==0.23.4 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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22 |
+
idna==3.7 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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23 |
+
importlib-resources==6.4.0 ; python_version >= "3.8" and python_version < "3.9"
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24 |
+
intel-openmp==2021.4.0 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12" and platform_system == "Windows"
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25 |
+
jinja2==3.1.4 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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26 |
+
joblib==1.4.2 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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27 |
+
jsonschema-specifications==2023.12.1 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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28 |
+
jsonschema==4.23.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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29 |
+
langcodes==3.4.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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30 |
+
language-data==1.2.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
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31 |
+
marisa-trie==1.2.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
32 |
markdown-it-py==3.0.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
33 |
+
markupsafe==2.1.5 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
34 |
mdurl==0.1.2 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
35 |
memory-profiler==0.61.0 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
36 |
+
mkl==2021.4.0 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12" and platform_system == "Windows"
|
37 |
mpmath==1.3.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
38 |
murmurhash==1.0.10 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
39 |
networkx==3.1 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
40 |
nltk==3.8.1 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
41 |
numpy==1.24.4 ; python_version >= "3.8" and python_version < "3.9"
|
42 |
+
numpy==1.26.4 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "3.12"
|
43 |
nvidia-cublas-cu12==12.1.3.1 ; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
44 |
nvidia-cuda-cupti-cu12==12.1.105 ; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
45 |
nvidia-cuda-nvrtc-cu12==12.1.105 ; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
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49 |
nvidia-curand-cu12==10.3.2.106 ; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
50 |
nvidia-cusolver-cu12==11.4.5.107 ; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
51 |
nvidia-cusparse-cu12==12.1.0.106 ; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
52 |
+
nvidia-nccl-cu12==2.20.5 ; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
53 |
+
nvidia-nvjitlink-cu12==12.5.82 ; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
54 |
nvidia-nvtx-cu12==12.1.105 ; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
55 |
+
packaging==24.1 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
56 |
pandas==1.5.3 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
57 |
+
pdf2image==1.17.0 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
58 |
+
phonenumbers==8.13.40 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
59 |
+
pillow==10.4.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
60 |
pkgutil-resolve-name==1.3.10 ; python_version >= "3.8" and python_version < "3.9"
|
61 |
preshed==3.0.9 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
62 |
+
presidio-analyzer==2.2.354 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
63 |
+
presidio-anonymizer==2.2.354 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
64 |
protobuf==3.20.3 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
65 |
+
psutil==6.0.0 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
66 |
+
pyarrow==16.1.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
67 |
+
pycryptodome==3.20.0 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
68 |
pydantic==1.10.13 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
69 |
+
pydeck==0.9.1 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
70 |
+
pygments==2.18.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
71 |
pyhpo==3.1.5 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
72 |
+
pytesseract==0.3.10 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
73 |
+
python-dateutil==2.9.0.post0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
74 |
+
pytz==2024.1 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
75 |
pyyaml==6.0.1 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
76 |
+
referencing==0.35.1 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
77 |
+
regex==2024.5.15 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
78 |
+
requests-file==2.1.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
79 |
+
requests==2.32.3 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
80 |
+
rich==13.7.1 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
81 |
+
rpds-py==0.19.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
82 |
sacremoses==0.0.53 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
83 |
+
safetensors==0.4.3 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
84 |
+
sentencepiece==0.2.0 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
85 |
+
setuptools==70.3.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
86 |
+
shellingham==1.5.4 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
87 |
six==1.16.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
88 |
+
smart-open==7.0.4 ; python_full_version >= "3.8.0" and python_version < "3.12" and python_full_version != "3.9.7"
|
89 |
smmap==5.0.1 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
90 |
spacy-legacy==3.0.12 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
91 |
spacy-loggers==1.0.5 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
92 |
+
spacy==3.7.5 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
93 |
srsly==2.4.8 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
94 |
stanza==1.1.1 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
95 |
+
streamlit==1.36.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
96 |
+
sympy==1.13.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
97 |
+
tbb==2021.13.0 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12" and platform_system == "Windows"
|
98 |
+
tenacity==8.5.0 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
99 |
+
thinc==8.2.5 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
100 |
+
tldextract==5.1.2 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
101 |
+
tokenizers==0.19.1 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
102 |
toml==0.10.2 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
103 |
+
toolz==0.12.1 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
104 |
+
torch==2.3.1 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
105 |
+
tornado==6.4.1 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
106 |
+
tqdm==4.66.4 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
107 |
+
transformers==4.42.4 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
108 |
+
triton==2.3.1 ; platform_system == "Linux" and platform_machine == "x86_64" and python_version < "3.12" and python_full_version >= "3.8.0" and python_full_version != "3.9.7"
|
109 |
+
typer==0.12.3 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
110 |
+
typing-extensions==4.12.2 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
111 |
+
unidecode==1.3.8 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
112 |
+
urllib3==2.2.2 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12"
|
113 |
+
wasabi==1.1.3 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
114 |
+
watchdog==4.0.1 ; python_version >= "3.8" and python_full_version != "3.9.7" and python_version < "3.12" and platform_system != "Darwin"
|
115 |
+
weasel==0.4.1 ; python_full_version >= "3.8.0" and python_full_version != "3.9.7" and python_version < "3.12"
|
116 |
+
wrapt==1.16.0 ; python_full_version >= "3.8.0" and python_version < "3.12" and python_full_version != "3.9.7"
|
117 |
+
zipp==3.19.2 ; python_version >= "3.8" and python_version < "3.9"
|
|
|
|