|
{ |
|
"pdf_processing": { |
|
"extract_images": false, |
|
"infer_table_structure": true, |
|
"strategy": "fast", |
|
"chunking_strategy": "by_title", |
|
"model_name": "yolox", |
|
"max_characters": 10000, |
|
"combine_text_under_n_chars": 100 |
|
}, |
|
"allowed_extensions": "pdf", |
|
"embeddings": "huggingface", |
|
"embeddings_model": "BAAI/bge-small-en-v1.5", |
|
"llm_model": "gpt-4-1106-preview", |
|
"model_temp": 0.2, |
|
"max_tokens": 512, |
|
"context_window": 5000, |
|
"UPLOAD_FOLDER": "../path/to/upload/folder", |
|
"GPT_PROMPT_PATH": "data/prompts/prompt_gpt.txt", |
|
"MISTRAL_PROMPT_PATH": "data/prompts/prompt_mistral.txt", |
|
"INFO_PROMPT_PATH": "data/prompts/prompt_info.txt", |
|
"peer_review_journals_path": "data/prompts/peer_review_journals.txt", |
|
"eq_network_journals_path": "data/prompts/eq_network_journals.txt", |
|
"queries": ["Does the article share any data or code? Look for terms related to supplementary materials or reproducibility.", |
|
"Has the study or any data in the article been registered in advance?", |
|
"Does the article adhere to specific reporting guidelines such as ISRCTN, CONSORT, PRISMA, MOOSE, STARD, ARRIVE, STROBE, SPIRIT, CARE, AGREE, SRQR, SQUIRE, MDAR, REMARK?", |
|
"Is the article's methodology described in detail, including where, when, how, what, and who?", |
|
"Are the data collection processes described in detail, including where, when, how, what, and who?", |
|
"Does the article provide a detailed description of the sample, including size, demographics, recruitment, and criteria?", |
|
"Does the article describe the data analysis process in detail?", |
|
"Does the article discuss measures taken to avoid or minimize systematic bias?", |
|
"Has the article been published in a journal?"], |
|
"criteria": [ |
|
"Data and code sharing.", |
|
"Has anything in the article been registered (in advance)?", |
|
"Does the article follow any reporting guidelines?", |
|
"Description of methodology", |
|
"Data collection processes", |
|
"Sample description. eg. size, demographics, recruitment, in-/exclusion criteria", |
|
"Data analysis process", |
|
"Measures to minimize systematic bias", |
|
"Peer Review"], |
|
"journal_query": "Is the given research paper published in any of the following journals: {}?", |
|
"author_query": "Give me details about the institutions (like university or hospital) and contact details (eg. email) of the corresponding author.", |
|
"title_query": "Output title of the paper." |
|
} |