| #--- Note: this file is designed to run locally as well as within docker to prep the environment | |
| #--- for volume initialization; ensure folders are in place; assume: we are in the /app folder | |
| mkdir -p data/demo_tiles/raw | |
| mkdir -p data/tiles/raw data/tiles/pred data/tiles/grad_bg data/tiles/grad_wt data/tiles/grad_vt | |
| mkdir -p data/wsi/raw | |
| <<blockComment | |
| - the binary model is stored as split files named mdl_nn | |
| - this is done to ensure that the model can be stored within gitHub | |
| - the split model is recreated on docker container startup using the cat command | |
| blockComment | |
| #--- recreate single model file from its parts, stored within a specific model version folder | |
| ./bin/models/util_joinModel.sh './bin/models/deeplabv3*vhflip30/model_a*' ./bin/models/model.pth | |
| #--- run streamlit/fastapi | |
| ./util_startLocal_streamlitFastApi.sh |