kaushalya commited on
Commit
a269b46
1 Parent(s): 97009c1

Fix loading the text model

Browse files
Files changed (1) hide show
  1. app.py +11 -10
app.py CHANGED
@@ -1,21 +1,22 @@
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  import os
 
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  import matplotlib.pyplot as plt
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  import numpy as np
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  import pandas as pd
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  import streamlit as st
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- from transformers import CLIPProcessor
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  from medclip.modeling_hybrid_clip import FlaxHybridCLIP
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- @st.cache(allow_output_mutation=True)
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  def load_model():
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- model, _ = FlaxHybridCLIP.from_pretrained("flax-community/medclip-roco", _do_init=False)
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- processor = CLIPProcessor.from_pretrained("openai/clip-vit-base-patch32")
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- return model, processor
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- @st.cache(allow_output_mutation=True)
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  def load_image_embeddings():
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  embeddings_df = pd.read_hdf('feature_store/image_embeddings_large.hdf', key='emb')
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  image_embeds = np.stack(embeddings_df['image_embedding'])
@@ -64,7 +65,7 @@ elif ex4_button:
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  image_list, image_embeddings = load_image_embeddings()
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- model, processor = load_model()
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  query = st.text_input("Enter your query here:", value=text_value)
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  dot_prod = None
@@ -78,8 +79,8 @@ if st.button("Search") or k_slider:
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  else:
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  with st.spinner(f"Searching ROCO test set for {query}..."):
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  k = k_slider
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- inputs = processor(text=[query], images=None, return_tensors="jax", padding=True)
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-
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  query_embedding = model.get_text_features(**inputs)
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  query_embedding = np.asarray(query_embedding)
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  query_embedding = query_embedding / np.linalg.norm(query_embedding, axis=-1, keepdims=True)
@@ -91,4 +92,4 @@ if st.button("Search") or k_slider:
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  for img_path, score in zip(matching_images, top_scores):
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  img = plt.imread(os.path.join(img_dir, img_path))
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  st.image(img, width=300)
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- st.write(f"{img_path} ({score:.2f})", help="score")
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  import os
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+ import token
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  import matplotlib.pyplot as plt
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  import numpy as np
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  import pandas as pd
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  import streamlit as st
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+ from transformers import CLIPProcessor, AutoTokenizer
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  from medclip.modeling_hybrid_clip import FlaxHybridCLIP
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+ @st.cache_resource
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  def load_model():
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+ model = FlaxHybridCLIP.from_pretrained("flax-community/medclip-roco", _do_init=True)
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+ tokenizer = AutoTokenizer.from_pretrained('allenai/scibert_scivocab_uncased')
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+ return model, tokenizer
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+ @st.cache_resource
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  def load_image_embeddings():
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  embeddings_df = pd.read_hdf('feature_store/image_embeddings_large.hdf', key='emb')
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  image_embeds = np.stack(embeddings_df['image_embedding'])
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  image_list, image_embeddings = load_image_embeddings()
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+ model, tokenizer = load_model()
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  query = st.text_input("Enter your query here:", value=text_value)
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  dot_prod = None
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  else:
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  with st.spinner(f"Searching ROCO test set for {query}..."):
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  k = k_slider
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+ inputs = tokenizer(text=[query], return_tensors="jax", padding=True)
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+ # st.write(f"Query inputs: {inputs}")
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  query_embedding = model.get_text_features(**inputs)
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  query_embedding = np.asarray(query_embedding)
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  query_embedding = query_embedding / np.linalg.norm(query_embedding, axis=-1, keepdims=True)
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  for img_path, score in zip(matching_images, top_scores):
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  img = plt.imread(os.path.join(img_dir, img_path))
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  st.image(img, width=300)
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+ st.write(f"{img_path} ({score:.2f})")