kartikmandar commited on
Commit
79a213a
·
1 Parent(s): 8d0cf27

ui bug fixed

Browse files
assets/icons/svg.py ADDED
@@ -0,0 +1,10 @@
 
 
 
 
 
 
 
 
 
 
 
1
+ # These are the icons for the sidebar buttons
2
+
3
+ HOME_ICON_SVG = """
4
+ <svg xmlns="http://www.w3.org/2000/svg" width="24" height="24" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round" class="icon icon-tabler icons-tabler-outline icon-tabler-home"><path stroke="none" d="M0 0h24v24H0z" fill="none"/><path d="M5 12l-2 0l9 -9l9 9l-2 0" /><path d="M5 12v7a2 2 0 0 0 2 2h10a2 2 0 0 0 2 -2v-7" /><path d="M9 21v-6a2 2 0 0 1 2 -2h2a2 2 0 0 1 2 2v6" /></svg>
5
+ """
6
+
7
+ LOAD_DATA_ICON_SVG = """
8
+ <svg xmlns="http://www.w3.org/2000/svg" width="24" height="24" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round" class="icon icon-tabler icons-tabler-outline icon-tabler-file-upload"><path stroke="none" d="M0 0h24v24H0z" fill="none"/><path d="M14 3v4a1 1 0 0 0 1 1h4" /><path d="M17 21h-10a2 2 0 0 1 -2 -2v-14a2 2 0 0 1 2 -2h7l5 5v11a2 2 0 0 1 -2 2z" /><path d="M12 11v6" /><path d="M9.5 13.5l2.5 -2.5l2.5 2.5" /></svg>
9
+ """
10
+
assets/images/holoviz_logo.png ADDED
assets/images/holoviz_logo_minimised.png ADDED
assets/images/stingray_explorer_minimised.png ADDED
assets/images/stingray_logo_minimised.png ADDED
explorer.py CHANGED
@@ -1,5 +1,4 @@
1
  import panel as pn
2
- from utils.strings import HOME_HEADING_STRING, WELCOME_MESSAGE_STRING, FOOTER_STRING
3
  from modules.Home.HomeContent import create_home_bokeh_plots_container, create_home_footer, create_home_header, create_home_help_box, create_home_main_area, create_home_output_box, create_home_warning_box
4
  from utils.sidebar import create_sidebar
5
 
@@ -25,7 +24,7 @@ output_box = create_home_output_box()
25
  warning_box = create_home_warning_box()
26
 
27
  # Create the plots container
28
- bokeh_plots_container = create_home_bokeh_plots_container()
29
 
30
  # Create the help box
31
  help_box = create_home_help_box()
@@ -33,7 +32,16 @@ help_box = create_home_help_box()
33
  # Create the footer
34
  footer = create_home_footer()
35
 
36
- sidebar = create_sidebar(main_area, header, footer, output_box, warning_box, help_box)
 
 
 
 
 
 
 
 
 
37
 
38
 
39
  # Create a FastGridTemplate layout
@@ -64,7 +72,7 @@ layout = pn.template.FastGridTemplate(
64
  theme_toggle=True,
65
  # background_color="#FFFFFF", # The toggle button choses it according to the theme
66
  neutral_color="#D3D3D3",
67
- accent_base_color="#c4e1c5",
68
  header_background="#000000",
69
  header_color="#c4e1c5",
70
  header_neutral_color="#D3D3D3",
@@ -88,13 +96,14 @@ layout = pn.template.FastGridTemplate(
88
  base_target="_self",
89
  )
90
 
91
- layout.main[0:10, 0:12] = header
92
- layout.main[10:45, 0:8] = main_area
93
- layout.main[10:26, 8:12] = output_box
94
- layout.main[26:45, 8:12] = warning_box
95
  layout.main[45:85, 0:12] = bokeh_plots_container
96
- layout.main[85:120, 0:12] = help_box
97
- layout.main[120:150, 0:12] = footer
 
98
 
99
  # Serve the layout
100
  layout.servable()
 
1
  import panel as pn
 
2
  from modules.Home.HomeContent import create_home_bokeh_plots_container, create_home_footer, create_home_header, create_home_help_box, create_home_main_area, create_home_output_box, create_home_warning_box
3
  from utils.sidebar import create_sidebar
4
 
 
24
  warning_box = create_home_warning_box()
25
 
26
  # Create the plots container
27
+ bokeh_plots = create_home_bokeh_plots_container()
28
 
29
  # Create the help box
30
  help_box = create_home_help_box()
 
32
  # Create the footer
33
  footer = create_home_footer()
34
 
35
+ # Containers for changing the layouts dynamically
36
+ header_container = pn.Column(header)
37
+ main_area_container = pn.Column(main_area)
38
+ output_box_container = pn.Column(output_box)
39
+ warning_box_container = pn.Column(warning_box)
40
+ bokeh_plots_container = pn.Column(bokeh_plots)
41
+ help_box_container = pn.Column(help_box)
42
+ footer_container = pn.Column(footer)
43
+
44
+ sidebar = create_sidebar(main_area=main_area_container, header=header_container, footer=footer_container, output_box=output_box_container, warning_box=warning_box_container, help_box=help_box_container)
45
 
46
 
47
  # Create a FastGridTemplate layout
 
72
  theme_toggle=True,
73
  # background_color="#FFFFFF", # The toggle button choses it according to the theme
74
  neutral_color="#D3D3D3",
75
+ accent_base_color="#5ead61",
76
  header_background="#000000",
77
  header_color="#c4e1c5",
78
  header_neutral_color="#D3D3D3",
 
96
  base_target="_self",
97
  )
98
 
99
+ layout.main[0:10, 0:12] = header_container
100
+ layout.main[10:45, 0:8] = main_area_container
101
+ layout.main[10:27, 8:12] = output_box_container
102
+ layout.main[27:45, 8:12] = warning_box_container
103
  layout.main[45:85, 0:12] = bokeh_plots_container
104
+ layout.main[85:120, 0:12] = help_box_container
105
+ layout.main[120:150, 0:12] = footer_container
106
+
107
 
108
  # Serve the layout
109
  layout.servable()
modules/DataLoading/DataIngestion.py CHANGED
@@ -103,3 +103,127 @@ async def load_event_data(
103
  # Clear the warnings after displaying them
104
  warning_handler.warnings.clear()
105
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
103
  # Clear the warnings after displaying them
104
  warning_handler.warnings.clear()
105
 
106
+ def save_loaded_files(
107
+ event, filename_input, format_input, format_checkbox, output, warning_output
108
+ ):
109
+ if not loaded_event_data:
110
+ output.value = "No files loaded to save."
111
+ return
112
+
113
+ filenames = (
114
+ [name.strip() for name in filename_input.value.split(",")]
115
+ if filename_input.value
116
+ else [event[0] for event in loaded_event_data]
117
+ )
118
+ formats = (
119
+ [fmt.strip() for fmt in format_input.value.split(",")]
120
+ if format_input.value
121
+ else []
122
+ )
123
+
124
+ if format_checkbox.value:
125
+ formats = ["hdf5" for _ in range(len(loaded_event_data))]
126
+
127
+ if len(filenames) < len(loaded_event_data):
128
+ output.value = "Please specify names for all loaded files."
129
+ return
130
+ if len(filenames) != len(loaded_event_data):
131
+ output.value = (
132
+ "Please ensure that the number of names matches the number of loaded files."
133
+ )
134
+ return
135
+ if len(formats) < len(loaded_event_data):
136
+ output.value = "Please specify formats for all loaded files or check the default format option."
137
+ return
138
+
139
+ saved_files = []
140
+ try:
141
+ for (loaded_name, event_list), file_name, file_format in zip(
142
+ loaded_event_data, filenames, formats
143
+ ):
144
+ if os.path.exists(
145
+ os.path.join(loaded_data_path, f"{file_name}.{file_format}")
146
+ ):
147
+ output.value = f"A file with the name '{file_name}' already exists. Please provide a different name."
148
+ return
149
+
150
+ save_path = os.path.join(loaded_data_path, f"{file_name}.{file_format}")
151
+ if file_format == 'hdf5':
152
+ event_list.to_astropy_table().write(save_path, format=file_format, path='data')
153
+ else:
154
+ event_list.write(save_path, file_format)
155
+
156
+ saved_files.append(
157
+ f"File '{file_name}' saved successfully to '{save_path}'."
158
+ )
159
+
160
+ output.value = "\n".join(saved_files)
161
+ if warning_handler.warnings:
162
+ warning_output.value = "\n".join(warning_handler.warnings)
163
+ else:
164
+ warning_output.value = "No warnings."
165
+ except Exception as e:
166
+ output.value = f"An error occurred while saving files: {e}"
167
+
168
+ # Clear the warnings after displaying them
169
+ warning_handler.warnings.clear()
170
+
171
+
172
+
173
+ def delete_selected_files(event, file_selector, output, warning_output):
174
+ if not file_selector.value:
175
+ output.value = "No file selected. Please select a file to delete."
176
+ return
177
+
178
+ file_paths = file_selector.value
179
+ deleted_files = []
180
+ for file_path in file_paths:
181
+ if file_path.endswith(".py"):
182
+ deleted_files.append(
183
+ f"Cannot delete file '{file_path}': Deleting .py files is not allowed."
184
+ )
185
+ continue
186
+
187
+ try:
188
+ # Change the file permissions to ensure it can be deleted
189
+ os.chmod(file_path, stat.S_IWUSR | stat.S_IREAD | stat.S_IWRITE)
190
+ os.remove(file_path)
191
+ deleted_files.append(f"File '{file_path}' deleted successfully.")
192
+ except Exception as e:
193
+ deleted_files.append(f"An error occurred while deleting '{file_path}': {e}")
194
+
195
+ output.value = "\n".join(deleted_files)
196
+ if warning_handler.warnings:
197
+ warning_output.value = "\n".join(warning_handler.warnings)
198
+ else:
199
+ warning_output.value = "No warnings."
200
+
201
+ warning_handler.warnings.clear()
202
+
203
+
204
+ def preview_loaded_files(event, output, warning_output, time_limit=10):
205
+ if not loaded_event_data:
206
+ output.value = "No files loaded to preview."
207
+ return
208
+
209
+ preview_data = []
210
+ for file_name, event_list in loaded_event_data:
211
+ try:
212
+ time_data = f"Times (first {time_limit}): {event_list.time[:time_limit]}"
213
+ mjdref = f"MJDREF: {event_list.mjdref}"
214
+ gti = f"GTI: {event_list.gti}"
215
+ preview_data.append(f"File: {file_name}\n{time_data}\n{mjdref}\n{gti}\n")
216
+ except Exception as e:
217
+ warning_handler.warn(str(e), category=RuntimeWarning)
218
+
219
+ if preview_data:
220
+ output.value = "\n\n".join(preview_data)
221
+ else:
222
+ output.value = "No valid files loaded for preview."
223
+
224
+ if warning_handler.warnings:
225
+ warning_output.value = "\n".join(warning_handler.warnings)
226
+ else:
227
+ warning_output.value = "No warnings."
228
+
229
+ warning_handler.warnings.clear()
modules/Home/HomeContent.py CHANGED
@@ -1,42 +1,48 @@
1
  # homecontent.py
2
 
3
  import panel as pn
4
- from utils.dashboardClasses import MainHeader, MainArea, OutputBox, WarningBox, BokehPlotsContainer, HelpBox, Footer
5
  from bokeh.plotting import figure
 
6
 
7
  def create_home_header():
8
  home_heading_input = pn.widgets.TextInput(name="Heading", value="Welcome to Stingray Explorer")
9
- home_subheading_input = pn.widgets.TextInput(name="Subheading", value="Where power meets comfort")
10
- return MainHeader(heading=home_heading_input, subheading=home_subheading_input)
 
 
 
 
 
 
 
 
11
 
12
  def create_home_main_area():
13
- tab1_content = pn.pane.Markdown("# Example Tab 1\nThis is the content for Tab 1.")
14
- tab2_content = pn.pane.HTML("<h1>Welcome to Tab 2</h1><p>This is some HTML content.</p>")
15
- p = figure(width=400, height=400)
16
- p.circle([1, 2, 3, 4, 5], [6, 7, 2, 4, 5], size=15, color="navy", alpha=0.5)
17
- tab3_content = pn.pane.Bokeh(p)
18
- tab4_content = pn.Column(pn.widgets.FloatSlider(name='Slider', start=0, end=10, value=5), pn.widgets.Checkbox(name='Checkbox', value=True))
19
-
20
- tabs_content = {"hi": tab1_content, "Tab 2": tab2_content, "Tab 3": tab3_content, "Tab 4": tab4_content, "alflakj": tab3_content}
21
  return MainArea(tabs_content=tabs_content)
22
 
23
  def create_home_output_box():
24
- return OutputBox(output_content="This is the output content")
25
 
26
  def create_home_warning_box():
27
- return WarningBox(warning_content="This is the warning content")
28
 
29
  def create_home_bokeh_plots_container():
30
- p1 = figure(title="Scatter Plot")
31
- p1.scatter([1, 2, 3], [4, 5, 6])
32
- p2 = figure(title="Line Plot")
33
- p2.line([1, 2, 3], [4, 5, 6])
34
- p3 = figure(title="Bar Plot")
35
- p3.vbar(x=[1, 2, 3], top=[4, 5, 6], width=0.5)
36
- return BokehPlotsContainer(flexbox_contents=[p1, p2, p3], titles=["Scatter Plot", "Line Plot", "Bar Plot"], sizes=[(200, 200), (200, 200), (300, 300)])
37
 
38
  def create_home_help_box():
39
- help_content = """## Help Section\nThis section provides help and documentation for using the dashboard."""
40
  return HelpBox(help_content=help_content, title="Help Section")
41
 
42
  def create_home_footer():
 
1
  # homecontent.py
2
 
3
  import panel as pn
4
+ from utils.DashboardClasses import MainHeader, MainArea, OutputBox, WarningBox, BokehPlotsContainer, HelpBox, Footer
5
  from bokeh.plotting import figure
6
+ from utils.strings import HOME_HEADER_STRING, WELCOME_MESSAGE_STRING, FOOTER_STRING, STINGRAY_TAB_STRING, HOLOVIZ_TAB_STRING, DASHBOARD_TAB_STRING, OUTPUT_BOX_STRING, WARNING_BOX_STRING, HELP_BOX_STRING
7
 
8
  def create_home_header():
9
  home_heading_input = pn.widgets.TextInput(name="Heading", value="Welcome to Stingray Explorer")
10
+ home_subheading_input = pn.widgets.TextInput(name="Subheading", value="Stingray GUI using HoloViz")
11
+
12
+ button = pn.widgets.Button(name="Change Heading", button_type="primary")
13
+ def change_heading(event):
14
+ home_heading_input.value = "New Heading"
15
+ home_subheading_input.value = "New Subheading"
16
+ button.on_click(change_heading)
17
+
18
+
19
+ return MainHeader(heading=home_heading_input, subheading=home_subheading_input, button_1_name="button", button_1_action=change_heading)
20
 
21
  def create_home_main_area():
22
+ tab1_content = pn.pane.Markdown(STINGRAY_TAB_STRING)
23
+ tab2_content = pn.pane.Markdown(HOLOVIZ_TAB_STRING)
24
+ tab3_content = pn.pane.Markdown(DASHBOARD_TAB_STRING)
25
+
26
+ tabs_content = {"What's Stingray?": tab1_content, "What's HoloViz?": tab2_content, "Dashboard": tab3_content}
27
+
 
 
28
  return MainArea(tabs_content=tabs_content)
29
 
30
  def create_home_output_box():
31
+ return OutputBox(output_content=OUTPUT_BOX_STRING)
32
 
33
  def create_home_warning_box():
34
+ return WarningBox(warning_content=WARNING_BOX_STRING)
35
 
36
  def create_home_bokeh_plots_container():
37
+ p1 = pn.pane.Markdown(" Plot 1")
38
+ p2 = pn.pane.Markdown(" Plot 2")
39
+ p3 = pn.pane.Markdown(" Plot 3")
40
+ p4 = pn.pane.Markdown("Plot 4")
41
+ p5 = pn.pane.Markdown("Plot 5")
42
+ return BokehPlotsContainer(flexbox_contents=[p1, p2, p3, p4, p5], titles=["Heading 1", "Heading 2", "Heading 3", "Heading 4", "Heading 5"], sizes=[(300, 300), (300, 300), (300, 300), (300, 300), (300, 300)])
 
43
 
44
  def create_home_help_box():
45
+ help_content = HELP_BOX_STRING
46
  return HelpBox(help_content=help_content, title="Help Section")
47
 
48
  def create_home_footer():
modules/QuickLook/LightCurve.py CHANGED
@@ -1,11 +1,11 @@
1
  import panel as pn
2
 
3
- from utils.dashboardClasses import MainHeader, MainArea, OutputBox, WarningBox, BokehPlotsContainer, HelpBox, Footer
4
 
5
- # Create a text input widget for the header
6
- heading_input = pn.widgets.TextInput(
7
- name="Heading", value="QuickLook Light Curve"
8
- )
9
 
10
- QuickLook_lightcurve_header = MainHeader(heading = heading_input)
 
 
 
 
11
 
 
1
  import panel as pn
2
 
3
+ from utils.DashboardClasses import MainHeader, MainArea, OutputBox, WarningBox, BokehPlotsContainer, HelpBox, Footer
4
 
 
 
 
 
5
 
6
+ def create_quicklook_lightcurve_header():
7
+ # Create a text input widget for the header
8
+ heading_input = pn.widgets.TextInput(
9
+ name="Heading", value="QuickLook Light Curve")
10
+ return MainHeader(heading = heading_input)
11
 
utils/dashboardClasses.py CHANGED
@@ -223,9 +223,14 @@ class MainHeader(pn.viewable.Viewer):
223
  )
224
  )
225
 
 
 
 
 
 
226
  # Create the layout for the header
227
  layout = pn.Row(
228
- pn.Column(heading_pane, subheading_pane),
229
  pn.FlexBox(
230
  *buttons,
231
  align_items="center",
@@ -235,6 +240,8 @@ class MainHeader(pn.viewable.Viewer):
235
  )
236
 
237
  return layout
 
 
238
 
239
 
240
  class MainArea(pn.viewable.Viewer):
@@ -259,7 +266,7 @@ class MainArea(pn.viewable.Viewer):
259
  """
260
  Returns the Panel layout for the main area, which includes tabs with their respective content.
261
  """
262
- tabs = pn.Tabs()
263
  for tab_name, content in self.tabs_content.items():
264
  tabs.append((tab_name, content))
265
 
@@ -292,7 +299,7 @@ class OutputBox(pn.viewable.Viewer):
292
  """
293
  Returns the Panel layout for the output box, including a heading and the content.
294
  """
295
- heading = pn.pane.Markdown("## Output")
296
  output_box = pn.widgets.TextAreaInput(
297
  name="",
298
  value=self.output_content,
@@ -303,6 +310,7 @@ class OutputBox(pn.viewable.Viewer):
303
  return pn.Column(heading, output_box, sizing_mode="stretch_both")
304
 
305
 
 
306
  class WarningBox(pn.viewable.Viewer):
307
  """
308
  WarningBox class represents a box to display warning content.
@@ -323,7 +331,7 @@ class WarningBox(pn.viewable.Viewer):
323
  """
324
  Returns the Panel layout for the warning box, including a heading and the content.
325
  """
326
- heading = pn.pane.Markdown("## Warning")
327
  warning_box = pn.widgets.TextAreaInput(
328
  name="",
329
  value=self.warning_content,
@@ -372,7 +380,7 @@ class BokehPlotsContainer(pn.viewable.Viewer):
372
  else:
373
  title = f"FlexBox {idx+1}"
374
 
375
- heading = pn.pane.Markdown(f"## {title}", align="center")
376
  flexbox = pn.Column(
377
  heading,
378
  content,
@@ -414,7 +422,7 @@ class HelpBox(pn.viewable.Viewer):
414
  """
415
  Returns the Panel layout for the help box, including a heading and Markdown content.
416
  """
417
- heading = pn.pane.Markdown(f"## {self.title}")
418
  help_markdown = pn.pane.Markdown(self.help_content, sizing_mode="stretch_both")
419
  return pn.Column(heading, help_markdown, sizing_mode="stretch_both")
420
 
@@ -479,8 +487,8 @@ class Footer(pn.viewable.Viewer):
479
  )
480
 
481
  contact_us_pane = pn.FlexBox(
482
- pn.pane.Markdown("Email: contact@example.com"),
483
- pn.pane.Markdown("Phone: (123) 456-7890"),
484
  flex_direction="row",
485
  justify_content="center",
486
  align_items="center",
@@ -525,3 +533,5 @@ class Footer(pn.viewable.Viewer):
525
  )
526
 
527
  return footer
 
 
 
223
  )
224
  )
225
 
226
+ # Create the layout for the header
227
+ layout_items = [heading_pane]
228
+ if self.subheading and self.subheading != "Default Subheading":
229
+ layout_items.append(subheading_pane)
230
+
231
  # Create the layout for the header
232
  layout = pn.Row(
233
+ pn.Column(*layout_items),
234
  pn.FlexBox(
235
  *buttons,
236
  align_items="center",
 
240
  )
241
 
242
  return layout
243
+
244
+
245
 
246
 
247
  class MainArea(pn.viewable.Viewer):
 
266
  """
267
  Returns the Panel layout for the main area, which includes tabs with their respective content.
268
  """
269
+ tabs = pn.Tabs(dynamic=True)
270
  for tab_name, content in self.tabs_content.items():
271
  tabs.append((tab_name, content))
272
 
 
299
  """
300
  Returns the Panel layout for the output box, including a heading and the content.
301
  """
302
+ heading = pn.pane.Markdown("<h2> Output </h2>")
303
  output_box = pn.widgets.TextAreaInput(
304
  name="",
305
  value=self.output_content,
 
310
  return pn.Column(heading, output_box, sizing_mode="stretch_both")
311
 
312
 
313
+
314
  class WarningBox(pn.viewable.Viewer):
315
  """
316
  WarningBox class represents a box to display warning content.
 
331
  """
332
  Returns the Panel layout for the warning box, including a heading and the content.
333
  """
334
+ heading = pn.pane.Markdown("<h2> Warning</h2>")
335
  warning_box = pn.widgets.TextAreaInput(
336
  name="",
337
  value=self.warning_content,
 
380
  else:
381
  title = f"FlexBox {idx+1}"
382
 
383
+ heading = pn.pane.Markdown(f"<h2> {title} </h2>", align="center")
384
  flexbox = pn.Column(
385
  heading,
386
  content,
 
422
  """
423
  Returns the Panel layout for the help box, including a heading and Markdown content.
424
  """
425
+ heading = pn.pane.Markdown(f"<h2> {self.title}</h2>")
426
  help_markdown = pn.pane.Markdown(self.help_content, sizing_mode="stretch_both")
427
  return pn.Column(heading, help_markdown, sizing_mode="stretch_both")
428
 
 
487
  )
488
 
489
  contact_us_pane = pn.FlexBox(
490
+ pn.pane.Markdown("Email: kartik4321mandar@gmail.com"),
491
+ pn.pane.Markdown("Slack: @kartikmandar"),
492
  flex_direction="row",
493
  justify_content="center",
494
  align_items="center",
 
533
  )
534
 
535
  return footer
536
+
537
+
utils/sidebar.py CHANGED
@@ -1,23 +1,26 @@
1
  import panel as pn
2
  import importlib
3
- from modules.QuickLook.LightCurve import QuickLook_lightcurve_header
4
  from modules.Home.HomeContent import create_home_bokeh_plots_container, create_home_footer, create_home_header, create_home_help_box, create_home_main_area, create_home_output_box, create_home_warning_box
 
5
 
6
  def create_sidebar(main_area, header, footer, output_box, warning_box, help_box):
7
  menu_items_quicklook_stingray = [
8
  ("Light Curve", "QuickLookLightCurve"),
9
  ("Power spectra", "QuickLookPowerspectra"),
10
- ("CrossCorrelation", "QuickLookCrossCorrelation"),
11
  ]
12
 
 
13
  # Home Button
14
  home_button = pn.widgets.Button(
15
- name="Home", button_type="primary", styles={"width": "100%"}
16
  )
17
 
18
  # Load Button
19
  load_data_button = pn.widgets.Button(
20
- name="Load Data", button_type="warning", styles={"width": "100%"}
 
21
  )
22
 
23
  # Create MenuButtons
@@ -25,32 +28,40 @@ def create_sidebar(main_area, header, footer, output_box, warning_box, help_box)
25
  name="Quicklook",
26
  items=menu_items_quicklook_stingray,
27
  button_type="primary",
28
- styles={"width": "100%"},
29
  )
30
 
31
  def handle_home_button_selection(event):
32
- a = create_home_header()
33
- header.heading = a.heading
34
  home_button.on_click(handle_home_button_selection)
35
 
36
  # Load Button changing main content
37
  def load_data(event):
38
  pass
 
39
  load_data_button.on_click(load_data)
40
 
41
  # Quicklook Button changing main content
42
  def handle_quicklook_button_selection(event):
43
  clicked = event.new
44
  if clicked == "QuickLookLightCurve":
45
- header.heading = QuickLook_lightcurve_header.heading
 
46
 
47
  quicklook_stingray_button.on_click(handle_quicklook_button_selection)
48
 
49
- sidebar = pn.Column(
 
50
  pn.pane.Markdown("# Navigation"),
51
- home_button,
52
- load_data_button,
 
53
  quicklook_stingray_button,
 
 
 
 
54
  )
55
 
56
  return sidebar
 
1
  import panel as pn
2
  import importlib
3
+ from modules.QuickLook.LightCurve import create_quicklook_lightcurve_header
4
  from modules.Home.HomeContent import create_home_bokeh_plots_container, create_home_footer, create_home_header, create_home_help_box, create_home_main_area, create_home_output_box, create_home_warning_box
5
+ from assets.icons.svg import HOME_ICON_SVG, LOAD_DATA_ICON_SVG
6
 
7
  def create_sidebar(main_area, header, footer, output_box, warning_box, help_box):
8
  menu_items_quicklook_stingray = [
9
  ("Light Curve", "QuickLookLightCurve"),
10
  ("Power spectra", "QuickLookPowerspectra"),
11
+ ("Cross Correlation", "QuickLookCrossCorrelation"),
12
  ]
13
 
14
+
15
  # Home Button
16
  home_button = pn.widgets.Button(
17
+ icon=HOME_ICON_SVG, icon_size="20px", name="", button_type="default", styles={"width": "50"}, description="Back to Home"
18
  )
19
 
20
  # Load Button
21
  load_data_button = pn.widgets.Button(
22
+ icon=LOAD_DATA_ICON_SVG, icon_size="20px",name="Load Data", button_type="warning", styles={"width": "100"},
23
+ description="Loading EventList"
24
  )
25
 
26
  # Create MenuButtons
 
28
  name="Quicklook",
29
  items=menu_items_quicklook_stingray,
30
  button_type="primary",
31
+ styles={"width": "90%"},
32
  )
33
 
34
  def handle_home_button_selection(event):
35
+ header[:]=[create_home_header()]
36
+
37
  home_button.on_click(handle_home_button_selection)
38
 
39
  # Load Button changing main content
40
  def load_data(event):
41
  pass
42
+
43
  load_data_button.on_click(load_data)
44
 
45
  # Quicklook Button changing main content
46
  def handle_quicklook_button_selection(event):
47
  clicked = event.new
48
  if clicked == "QuickLookLightCurve":
49
+ header[:]=[create_quicklook_lightcurve_header()]
50
+
51
 
52
  quicklook_stingray_button.on_click(handle_quicklook_button_selection)
53
 
54
+ sidebar = pn.FlexBox(
55
+
56
  pn.pane.Markdown("# Navigation"),
57
+ pn.FlexBox(home_button,
58
+ load_data_button, flex_direction="row", justify_content="center", align_items="center"),
59
+
60
  quicklook_stingray_button,
61
+
62
+ flex_direction="column",
63
+ align_items="flex-start",
64
+ justify_content="flex-start",
65
  )
66
 
67
  return sidebar
utils/strings.py CHANGED
@@ -1,6 +1,6 @@
1
- ## This section contains the textual strings used in the explorer.py
2
 
3
- HOME_HEADING_STRING = """
4
  <h1>Welcome to the Stingray Explorer Dashboard</h1>
5
  """
6
 
@@ -68,4 +68,145 @@ FOOTER_STRING = """
68
  <p>Stingray Explorer Dashboard</p>
69
  <p>&copy; 2021 Kartik Mandar</p>
70
  </div>
71
- """
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ## This section contains the textual strings used in the HomeContent.py
2
 
3
+ HOME_HEADER_STRING = """
4
  <h1>Welcome to the Stingray Explorer Dashboard</h1>
5
  """
6
 
 
68
  <p>Stingray Explorer Dashboard</p>
69
  <p>&copy; 2021 Kartik Mandar</p>
70
  </div>
71
+ """
72
+
73
+
74
+ # Tabs in Main Area of Home Page
75
+
76
+ STINGRAY_TAB_STRING = """
77
+ <h2> Stingray: Next-Generation Spectral Timing </h2>
78
+
79
+ ![Stingray-logo](../assets/images/stingray_logo_minimised.png)
80
+
81
+ Stingray is a Python library designed to perform time series analysis and related tasks on astronomical light curves. It supports a range of commonly-used Fourier analysis techniques, as well as extensions for analyzing pulsar data, simulating data sets, and statistical modeling. Stingray is designed to be easy to extend and easy to incorporate into data analysis workflows and pipelines.
82
+
83
+ <h3> Features </h3>
84
+
85
+ <h4> Current Capabilities </h4>
86
+
87
+ 1. **Data handling and simulation**
88
+ - Loading event lists from FITS files (and generally good handling of OGIP-compliant missions, like RXTE/PCA, NuSTAR/FPM, XMM-Newton/EPIC, NICER/XTI)
89
+ - Constructing light curves and time series from event data
90
+ - Various operations on time series (e.g. addition, subtraction, joining, and truncation)
91
+ - Simulating a light curve with a given power spectrum
92
+ - Simulating a light curve from another light curve and a 1-d (time) or 2-d (time-energy) impulse response
93
+ - Simulating an event list from a given light curve _and_ with a given energy spectrum
94
+ - Good Time Interval operations
95
+ - Filling gaps in light curves with statistically sound fake data
96
+
97
+ 2. **Fourier methods**
98
+ - Power spectra and cross spectra in Leahy, rms normalization, absolute rms, and no normalization
99
+ - Averaged power spectra and cross spectra
100
+ - Dynamical power spectra and cross spectra
101
+ - Maximum likelihood fitting of periodograms/parametric models
102
+ - (Averaged) cross spectra
103
+ - Coherence, time lags
104
+ - Variability-Energy spectra, like covariance spectra and lags (needs testing)
105
+ - Covariance spectra (needs testing)
106
+ - Bispectra (needs testing)
107
+ - (Bayesian) quasi-periodic oscillation searches
108
+ - Lomb-Scargle periodograms and cross spectra
109
+ - Power Colors
110
+
111
+ 3. **Other time series methods**
112
+ - Pulsar searches with Epoch Folding, Z-test
113
+ - Gaussian Processes for QPO studies
114
+ - Cross-correlation functions
115
+
116
+ <h4> Future Plans </h4>
117
+
118
+ Other future additions we are currently implementing are:
119
+ - Bicoherence
120
+ - Phase-resolved spectroscopy of quasi-periodic oscillations
121
+ - Fourier-frequency-resolved spectroscopy
122
+ - Full HEASARC-compatible mission support
123
+ - Pulsar searches with Z-test
124
+ - Binary pulsar searches
125
+
126
+ <h4> Platform-specific Issues </h4>
127
+
128
+ Windows uses an internal 32-bit representation for int. This might create numerical errors when using large integer numbers (e.g., when calculating the sum of a light curve, if the lc.counts array is an integer). On Windows, we automatically convert the counts array to float. The small numerical errors should be a relatively small issue compared to the above.
129
+
130
+ <br></br>
131
+ """
132
+
133
+ HOLOVIZ_TAB_STRING = """
134
+ <h2> High-level tools to simplify visualization in Python </h2>
135
+
136
+ ![HoloViz-logo](../assets/images/holoviz_logo_minimised.png)
137
+
138
+ **HoloViz provides:**
139
+
140
+ - High-level tools that make it easier to apply Python plotting libraries to your data.
141
+ - A comprehensive tutorial showing how to use the available tools together to do a wide range of different tasks.
142
+ - Sample datasets to work with.
143
+
144
+ <h3> HoloViz-maintained libraries </h3>
145
+
146
+ HoloViz provides a set of Python packages that make visualization easier, more accurate, and more powerful:
147
+
148
+ - **Panel**: For making apps and dashboards for your plots from any supported plotting library.
149
+ - **hvPlot**: To quickly generate interactive plots from your data.
150
+ - **HoloViews**: To help you make all of your data instantly visualizable.
151
+ - **GeoViews**: To extend HoloViews for geographic data.
152
+ - **Datashader**: For rendering even the largest datasets.
153
+ - **Lumen**: To build data-driven dashboards from a simple YAML specification.
154
+ - **Param**: To create declarative user-configurable objects.
155
+ - **Colorcet**: For perceptually uniform colormaps.
156
+
157
+ <h3> Building on the SciPy/PyData/PyViz ecosystem </h3>
158
+
159
+ HoloViz tools build on the many excellent visualization tools available in the scientific Python ecosystem, allowing you to access their power conveniently and efficiently. The core tools make use of:
160
+ - **Bokeh**: For interactive plotting.
161
+ - **Matplotlib**: For publication-quality output.
162
+ - **Plotly**: For interactive 3D visualizations.
163
+
164
+ **Panel** lets you combine any of these visualizations with output from nearly any other Python plotting library, including specific support for:
165
+ - seaborn
166
+ - altair
167
+ - vega
168
+ - plotnine
169
+ - graphviz
170
+ - ggplot2
171
+ - Plus anything that can generate HTML, PNG, or SVG.
172
+
173
+ HoloViz tools and examples generally work with any Python standard data types (lists, dictionaries, etc.), plus:
174
+ - Pandas or Dask DataFrames
175
+ - NumPy, Xarray, or Dask arrays
176
+ - Including remote data from the Intake data catalog library.
177
+
178
+ They also use Dask and Numba to speed up computations along with algorithms and functions from SciPy, and support both GPUs and CPUs to make use of all your available hardware.
179
+
180
+ HoloViz tools are designed for general-purpose use but also support some domain-specific datatypes like:
181
+ - Graphs from NetworkX
182
+ - Geographic data from GeoPandas, Cartopy, and Iris.
183
+
184
+ HoloViz tools provide extensive support for Jupyter notebooks, as well as for standalone Python-backed web servers and exporting visualizations or apps as images or static HTML files.
185
+ <br/>
186
+ """
187
+
188
+ DASHBOARD_TAB_STRING = """
189
+ <h2> Stingray Explorer </h2>
190
+
191
+ ![Stingray-Explorer-logo](../assets/images/stingray_explorer_minimised.png)
192
+
193
+ This dashboard is designed to provide a comprehensive toolset for X-ray astronomy data analysis. For now the dashboard provided quicklook features like generating an EventList, loading an EvenList, and generating a lightcurve from the EventList.
194
+
195
+ <br/>
196
+ """
197
+
198
+ OUTPUT_BOX_STRING = """
199
+ This is the output container. It will display the output of the analysis tools.
200
+ It may contain what EventLists are made, what lightcurves are generated, what power spectra are calculated, etc. It can also be used to preview the loaded EventList.
201
+ """
202
+
203
+
204
+ WARNING_BOX_STRING = """
205
+ This is the warning container. It will display any warnings or errors that occur during the analysis process.
206
+ """
207
+
208
+ HELP_BOX_STRING = """
209
+ This is the helpbox container. It will display any help or documentation for the analysis tools.
210
+ It will also have links to the documentation and tutorials for the tools.
211
+ And have a brief description of the physics behind the analysis.
212
+ """