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| # sh install.sh --stage 2 --stop_stage 2 --system_version centos | |
| python_version=3.8.10 | |
| system_version=centos | |
| verbose=true; | |
| stage=-1 | |
| stop_stage=0 | |
| # parse options | |
| while true; do | |
| [ -z "${1:-}" ] && break; # break if there are no arguments | |
| case "$1" in | |
| --*) name=$(echo "$1" | sed s/^--// | sed s/-/_/g); | |
| eval '[ -z "${'"$name"'+xxx}" ]' && echo "$0: invalid option $1" 1>&2 && exit 1; | |
| old_value="(eval echo \\$$name)"; | |
| if [ "${old_value}" == "true" ] || [ "${old_value}" == "false" ]; then | |
| was_bool=true; | |
| else | |
| was_bool=false; | |
| fi | |
| # Set the variable to the right value-- the escaped quotes make it work if | |
| # the option had spaces, like --cmd "queue.pl -sync y" | |
| eval "${name}=\"$2\""; | |
| # Check that Boolean-valued arguments are really Boolean. | |
| if $was_bool && [[ "$2" != "true" && "$2" != "false" ]]; then | |
| echo "$0: expected \"true\" or \"false\": $1 $2" 1>&2 | |
| exit 1; | |
| fi | |
| shift 2; | |
| ;; | |
| *) break; | |
| esac | |
| done | |
| work_dir="$(pwd)" | |
| if [ ${system_version} = "centos" ]; then | |
| yum install -y bzip2 git lrzsz wget vim cronie | |
| elif [ ${system_version} = "ubuntu" ]; then | |
| apt-get install -y bzip2 git lrzsz wget vim cron | |
| fi | |
| if [ ${stage} -le 1 ] && [ ${stop_stage} -ge 1 ]; then | |
| $verbose && echo "stage 1: install miniconda" | |
| cd "${work_dir}" || exit 1; | |
| sh ./script/install_conda.sh --system_version "${system_version}" | |
| fi | |
| if [ ${stage} -le 2 ] && [ ${stop_stage} -ge 2 ]; then | |
| $verbose && echo "stage 2: create conda env" | |
| # source activate MFA | |
| conda create -n MFA python==3.8 | |
| fi | |