Spaces:
Sleeping
Sleeping
remove .parallel
Browse files- calculate_shap.R +8 -17
calculate_shap.R
CHANGED
|
@@ -46,8 +46,7 @@ calculate_shap_deprecated <- function(dataset,model,nsim=10) {
|
|
| 46 |
X = trainset,
|
| 47 |
pred_wrapper = p_function_G,
|
| 48 |
nsim = nsim,
|
| 49 |
-
newdata = trainset_G
|
| 50 |
-
.parallel = FALSE
|
| 51 |
)
|
| 52 |
message(" - Calculating SHAP values for class GM")
|
| 53 |
shap_values_GM <-
|
|
@@ -56,8 +55,7 @@ calculate_shap_deprecated <- function(dataset,model,nsim=10) {
|
|
| 56 |
X = trainset,
|
| 57 |
pred_wrapper = p_function_GM,
|
| 58 |
nsim = nsim,
|
| 59 |
-
newdata = trainset_GM
|
| 60 |
-
.parallel = FALSE
|
| 61 |
)
|
| 62 |
message(" - Calculating SHAP values for class R")
|
| 63 |
shap_values_R <-
|
|
@@ -66,8 +64,7 @@ calculate_shap_deprecated <- function(dataset,model,nsim=10) {
|
|
| 66 |
X = trainset,
|
| 67 |
pred_wrapper = p_function_R,
|
| 68 |
nsim = nsim,
|
| 69 |
-
newdata = trainset_R
|
| 70 |
-
.parallel = FALSE
|
| 71 |
)
|
| 72 |
message(" - Calculating SHAP values for class W")
|
| 73 |
shap_values_W <-
|
|
@@ -76,8 +73,7 @@ calculate_shap_deprecated <- function(dataset,model,nsim=10) {
|
|
| 76 |
X = trainset,
|
| 77 |
pred_wrapper = p_function_W,
|
| 78 |
nsim = nsim,
|
| 79 |
-
newdata = trainset_W
|
| 80 |
-
.parallel = FALSE
|
| 81 |
# adjust = TRUE
|
| 82 |
)
|
| 83 |
|
|
@@ -169,8 +165,7 @@ calculate_shap <- function(dataset,model,nsim=10) {
|
|
| 169 |
X = trainset,
|
| 170 |
pred_wrapper = p_function_G,
|
| 171 |
nsim = nsim,
|
| 172 |
-
newdata = trainset_G
|
| 173 |
-
.parallel = FALSE
|
| 174 |
)
|
| 175 |
message(" - Calculating SHAP values for class GM")
|
| 176 |
shap_values_GM <-
|
|
@@ -179,8 +174,7 @@ calculate_shap <- function(dataset,model,nsim=10) {
|
|
| 179 |
X = trainset,
|
| 180 |
pred_wrapper = p_function_GM,
|
| 181 |
nsim = nsim,
|
| 182 |
-
newdata = trainset_GM
|
| 183 |
-
.parallel = FALSE
|
| 184 |
)
|
| 185 |
message(" - Calculating SHAP values for class R")
|
| 186 |
shap_values_R <-
|
|
@@ -189,8 +183,7 @@ calculate_shap <- function(dataset,model,nsim=10) {
|
|
| 189 |
X = trainset,
|
| 190 |
pred_wrapper = p_function_R,
|
| 191 |
nsim = nsim,
|
| 192 |
-
newdata = trainset_R
|
| 193 |
-
.parallel = FALSE
|
| 194 |
)
|
| 195 |
message(" - Calculating SHAP values for class W")
|
| 196 |
shap_values_W <-
|
|
@@ -199,8 +192,7 @@ calculate_shap <- function(dataset,model,nsim=10) {
|
|
| 199 |
X = trainset,
|
| 200 |
pred_wrapper = p_function_W,
|
| 201 |
nsim = nsim,
|
| 202 |
-
newdata = trainset_W
|
| 203 |
-
.parallel = FALSE
|
| 204 |
# adjust = TRUE
|
| 205 |
)
|
| 206 |
|
|
@@ -275,7 +267,6 @@ calculate_shap_class <- function(dataset, new_data, model,nsim=10,
|
|
| 275 |
pred_wrapper = function_class,
|
| 276 |
nsim = nsim,
|
| 277 |
newdata = new_data_class,
|
| 278 |
-
.parallel = FALSE
|
| 279 |
)
|
| 280 |
|
| 281 |
shap_values_class$class<-Activity
|
|
|
|
| 46 |
X = trainset,
|
| 47 |
pred_wrapper = p_function_G,
|
| 48 |
nsim = nsim,
|
| 49 |
+
newdata = trainset_G
|
|
|
|
| 50 |
)
|
| 51 |
message(" - Calculating SHAP values for class GM")
|
| 52 |
shap_values_GM <-
|
|
|
|
| 55 |
X = trainset,
|
| 56 |
pred_wrapper = p_function_GM,
|
| 57 |
nsim = nsim,
|
| 58 |
+
newdata = trainset_GM
|
|
|
|
| 59 |
)
|
| 60 |
message(" - Calculating SHAP values for class R")
|
| 61 |
shap_values_R <-
|
|
|
|
| 64 |
X = trainset,
|
| 65 |
pred_wrapper = p_function_R,
|
| 66 |
nsim = nsim,
|
| 67 |
+
newdata = trainset_R
|
|
|
|
| 68 |
)
|
| 69 |
message(" - Calculating SHAP values for class W")
|
| 70 |
shap_values_W <-
|
|
|
|
| 73 |
X = trainset,
|
| 74 |
pred_wrapper = p_function_W,
|
| 75 |
nsim = nsim,
|
| 76 |
+
newdata = trainset_W
|
|
|
|
| 77 |
# adjust = TRUE
|
| 78 |
)
|
| 79 |
|
|
|
|
| 165 |
X = trainset,
|
| 166 |
pred_wrapper = p_function_G,
|
| 167 |
nsim = nsim,
|
| 168 |
+
newdata = trainset_G
|
|
|
|
| 169 |
)
|
| 170 |
message(" - Calculating SHAP values for class GM")
|
| 171 |
shap_values_GM <-
|
|
|
|
| 174 |
X = trainset,
|
| 175 |
pred_wrapper = p_function_GM,
|
| 176 |
nsim = nsim,
|
| 177 |
+
newdata = trainset_GM
|
|
|
|
| 178 |
)
|
| 179 |
message(" - Calculating SHAP values for class R")
|
| 180 |
shap_values_R <-
|
|
|
|
| 183 |
X = trainset,
|
| 184 |
pred_wrapper = p_function_R,
|
| 185 |
nsim = nsim,
|
| 186 |
+
newdata = trainset_R
|
|
|
|
| 187 |
)
|
| 188 |
message(" - Calculating SHAP values for class W")
|
| 189 |
shap_values_W <-
|
|
|
|
| 192 |
X = trainset,
|
| 193 |
pred_wrapper = p_function_W,
|
| 194 |
nsim = nsim,
|
| 195 |
+
newdata = trainset_W
|
|
|
|
| 196 |
# adjust = TRUE
|
| 197 |
)
|
| 198 |
|
|
|
|
| 267 |
pred_wrapper = function_class,
|
| 268 |
nsim = nsim,
|
| 269 |
newdata = new_data_class,
|
|
|
|
| 270 |
)
|
| 271 |
|
| 272 |
shap_values_class$class<-Activity
|