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  *.zip filter=lfs diff=lfs merge=lfs -text
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+ models/bertopic_model_tokyo_olympics_tweets filter=lfs diff=lfs merge=lfs -text
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+ models/bertopic_model_tokyo_olympics_tweets_unclean filter=lfs diff=lfs merge=lfs -text
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+ # Byte-compiled / optimized / DLL files
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+ __pycache__/
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+ *.py[cod]
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+ *$py.class
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+ # C extensions
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+ *.so
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+ # Distribution / packaging
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+ .Python
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+ build/
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+ dist/
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+ downloads/
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+ eggs/
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+ .eggs/
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+ lib/
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+ lib64/
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+ parts/
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+ sdist/
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+ var/
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+ wheels/
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+ pip-wheel-metadata/
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+ share/python-wheels/
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+ *.egg-info/
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+ .installed.cfg
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+ *.egg
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+ MANIFEST
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+
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+ # PyInstaller
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+ # Usually these files are written by a python script from a template
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+ END OF TERMS AND CONDITIONS
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+ How to Apply These Terms to Your New Programs
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+ If you develop a new program, and you want it to be of the greatest
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+ Also add information on how to contact you by electronic and paper mail.
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+ You should also get your employer (if you work as a programmer) or school,
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+ For more information on this, and how to apply and follow the GNU GPL, see
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+ <https://www.gnu.org/licenses/>.
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+ The GNU General Public License does not permit incorporating your program
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+ into proprietary programs. If your program is a subroutine library, you
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+ the library. If this is what you want to do, use the GNU Lesser General
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data/bfi_sample_answers.csv ADDED
The diff for this file is too large to render. See raw diff
 
data/bfi_sample_questions.csv ADDED
@@ -0,0 +1,26 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ question,description
2
+ Q1,Am indifferent to the feelings of others.
3
+ Q2,Inquire about others' well-being.
4
+ Q3,Know how to comfort others.
5
+ Q4,Love children.
6
+ Q5,Make people feel at ease.
7
+ Q6,Am exacting in my work.
8
+ Q7,Continue until everything is perfect.
9
+ Q8,Do things according to a plan.
10
+ Q9,Do things in a half-way manner.
11
+ Q10,Waste my time.
12
+ Q11,Don't talk a lot.
13
+ Q12,Find it difficult to approach others.
14
+ Q13,Know how to captivate people.
15
+ Q14,Make friends easily.
16
+ Q15,Take charge.
17
+ Q16,Get angry easily.
18
+ Q17,Get irritated easily.
19
+ Q18,Have frequent mood swings.
20
+ Q19,Often feel blue.
21
+ Q20,Panic easily.
22
+ Q21,Am full of ideas.
23
+ Q22,Avoid difficult reading material.
24
+ Q23,Carry the conversation to a higher level.
25
+ Q24,Spend time reflecting on things.
26
+ Q25,Will not probe deeply into a subject.
data/imdb.csv ADDED
The diff for this file is too large to render. See raw diff
 
data/tokyo_olympics_tweets.csv ADDED
The diff for this file is too large to render. See raw diff
 
data/topic_results.csv ADDED
The diff for this file is too large to render. See raw diff
 
requirements.txt ADDED
@@ -0,0 +1,13 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ streamlit==1.10.0
2
+ bertopic==0.11.0
3
+ cffi==1.15.0
4
+ factor_analyzer==0.4.0
5
+ matplotlib==3.5.1
6
+ nltk==3.7
7
+ numpy==1.21.5
8
+ pandas==1.4.2
9
+ plotly==5.6.0
10
+ scikit_learn==1.1.1
11
+ scipy==1.7.3
12
+ seaborn==0.11.2
13
+ tqdm==4.64.0
survey_analytics.ipynb ADDED
The diff for this file is too large to render. See raw diff
 
survey_analytics_library.py ADDED
@@ -0,0 +1,383 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+
2
+ # imports
3
+ import pandas as pd
4
+ import numpy as np
5
+ import streamlit as st
6
+ from tqdm.notebook import tqdm
7
+ import matplotlib.pyplot as plt
8
+ import plotly.express as px
9
+
10
+ from sklearn.cluster import KMeans
11
+ from sklearn.metrics import silhouette_score
12
+
13
+ import zipfile
14
+ from xml.etree.cElementTree import XML
15
+
16
+ import re
17
+ from nltk.corpus import stopwords
18
+
19
+
20
+
21
+ # # create elbow plot with kmeans to find optimal number of clusters
22
+ # def create_elbow_plot_kmeans(df, num_clusters, init_method='k-means++', n_init=10, random_state=42, plot=True, template='simple_white', save=False):
23
+ # '''
24
+ # create elbow plot with kmeans to find optimal number of clusters based on inertia
25
+ # where the clusters strikes a balance between being not segmented enough and being too fragmented
26
+
27
+ # we look for the point of diminishing returns (also known as the 'elbow') in terms of the inertia,
28
+ # where inertia is how close the data points are to their respective centers or centroids
29
+
30
+ # arguments:
31
+ # df (df): a dataframe of data to cluster
32
+ # num_clusters (int): number of clusters to plot
33
+ # init_method (str): default to 'k-means++', other option is 'random'
34
+ # n_init (int): default to 10, number of times to run model, cost from the best run will be used
35
+ # random_state (int): default to 42, random seed used to initialise the model
36
+ # plot (bool): default to True, option to turn off plots
37
+ # template (str): default to 'simple_white', change as desired
38
+ # save (bool): default to False, if True save plot as .html file
39
+
40
+ # returns:
41
+ # a list of inertia for each run
42
+ # '''
43
+
44
+ # # create empty list to store inertia for each run
45
+ # inertia = []
46
+ # # define range of clusters to try
47
+ # k = range(2, num_clusters+1)
48
+
49
+ # # loop through number of clusters
50
+ # for num_clusters in tqdm(k):
51
+ # # define model
52
+ # kmeans = KMeans(n_clusters=num_clusters, init=init_method, n_init=n_init, random_state=random_state)
53
+ # # fit and predict data
54
+ # kmeans.fit_predict(df)
55
+ # # get predicted labels
56
+ # predicted_labels = kmeans.labels_
57
+ # # append score to list of scores
58
+ # inertia.append(kmeans.inertia_)
59
+
60
+ # # plot elbow plot
61
+ # if plot:
62
+ # fig = px.line(
63
+ # pd.DataFrame({'num_clusters':list(k), 'inertia':inertia}),
64
+ # x='num_clusters',
65
+ # y='inertia',
66
+ # title='Elbow Plot for Optimal Number of Clusters with '+init_method,
67
+ # markers=True,
68
+ # template=template,
69
+ # width=800,
70
+ # height=500,
71
+ # )
72
+ # st.plotly_chart(fig, use_container_width=True)
73
+ # if save:
74
+ # fig.write_html('Elbow Plot for Optimal Number of Clusters with '+init_method+'.html')
75
+
76
+ # # return
77
+ # return inertia
78
+
79
+
80
+
81
+ # # create plot of silhouette scores with sklearn model to find optimal number of clusters
82
+ # def silhouette_score_plot_kmeans(df, num_clusters, init_method='k-means++', n_init=10, random_state=42, plot=True, template='simple_white', save=False):
83
+ # '''
84
+ # create plot of silhouette score with kmeans to find optimal number of clusters
85
+ # where the clusters strikes a balance between being not segmented enough and being too fragmented
86
+ # the closer the score is to 1, the more easily distinguishable are the clusters from each other
87
+
88
+ # arguments:
89
+ # df (df): a dataframe of data to cluster
90
+ # num_clusters (int): number of clusters to plot
91
+ # init_method (str): default to 'k-means++', other option is 'random'
92
+ # n_init (int): default to 10, number of times to run model, cost from the best run will be used
93
+ # random_state (int): default to 42, random seed used to initialise the model
94
+ # plot (bool): default to True, option to turn off plots
95
+ # template (str): default to 'simple_white', change as desired
96
+ # save (bool): default to False, if True save plot as .html file
97
+
98
+ # returns:
99
+ # a list of silhouette scores for each run
100
+ # '''
101
+
102
+ # # create empty list to store silhoutte scores for each run
103
+ # silhouette_scores = []
104
+ # # define range of clusters to try
105
+ # k = range(2, num_clusters+1)
106
+
107
+ # # loop through number of clusters
108
+ # for num_clusters in tqdm(k):
109
+ # # define model
110
+ # kmeans = KMeans(n_clusters=num_clusters, init=init_method, n_init=n_init, random_state=random_state)
111
+ # # fit and predict data
112
+ # kmeans.fit_predict(df)
113
+ # # get predicted labels
114
+ # predicted_labels = kmeans.labels_
115
+ # # get silhoutte score
116
+ # score = silhouette_score(df, predicted_labels)
117
+ # # append score to list of scores
118
+ # silhouette_scores.append(score)
119
+
120
+ # # plot silhouette scores
121
+ # if plot:
122
+ # fig = px.line(
123
+ # pd.DataFrame({'num_clusters':list(k), 'silhouette_scores':silhouette_scores}),
124
+ # x='num_clusters',
125
+ # y='silhouette_scores',
126
+ # title='Silhouette Scores for Optimal Number of Clusters with '+init_method,
127
+ # markers=True,
128
+ # template=template,
129
+ # width=800,
130
+ # height=500,
131
+ # )
132
+ # st.plotly_chart(fig, use_container_width=True)
133
+ # if save:
134
+ # fig.write_html('Silhouette Scores for Optimal Number of Clusters with '+init_method+'.html')
135
+
136
+ # # return
137
+ # return silhouette_scores
138
+
139
+
140
+
141
+ # replace text with multiple replacements
142
+ def replace_text(string, dict_of_replacements):
143
+ '''
144
+ replace multiple substrings in a string with a dictionary of replacements
145
+ to be used if replacements are fixed and do not require regex as replace() is faster than re.sub()
146
+ for regex replacements use clean_text()
147
+ arguments:
148
+ string (str): string for replacement
149
+ dict_of_replacements (dict): dictionary of substring to replace and replacement
150
+ e.g. {'to replace this':'with this',...}
151
+ returns:
152
+ a string with substrings replaced
153
+ '''
154
+ # loop through dict
155
+ for key, value in dict_of_replacements.items():
156
+ # perform replacement
157
+ string = string.replace(key, value)
158
+ # return
159
+ return string
160
+
161
+
162
+
163
+ # clean text string
164
+ def clean_text(text_string, list_of_replacements, lowercase=True, ignorecase=False):
165
+ '''
166
+ clean text string
167
+ lower case string
168
+ regex sub user defined patterns with user defined replacements
169
+
170
+ arguments:
171
+ text_string (str): text string to clean
172
+ list_of_replacements (list): a list of tuples consisting of regex pattern and replacement value
173
+ e.g. [('[^a-z\s]+', ''), ...]
174
+ lowercase (bool): default to True, if True, convert text to lowercase
175
+ ignorecase (bool): default to False, if True, ignore case when applying re.sub()
176
+
177
+ returns:
178
+ a cleaned text string
179
+ '''
180
+
181
+ # check lowercase argument
182
+ if lowercase:
183
+ # lower case text string
184
+ clean_string = text_string.lower()
185
+ else:
186
+ # keep text as is
187
+ clean_string = text_string
188
+
189
+ if ignorecase:
190
+ # loop through each pattern and replacement
191
+ for pattern, replacement in list_of_replacements:
192
+ # replace defined pattern with defined replacement value
193
+ clean_string = re.sub(pattern, replacement, clean_string, flags=re.IGNORECASE)
194
+ else:
195
+ # loop through each pattern and replacement
196
+ for pattern, replacement in list_of_replacements:
197
+ # replace defined pattern with defined replacement value
198
+ clean_string = re.sub(pattern, replacement, clean_string)
199
+
200
+ # return
201
+ return clean_string
202
+
203
+
204
+
205
+ # remove stopwords from tokens
206
+ def remove_stopwords(tokens, language='english'):
207
+ '''
208
+ remove stopwords from tokens using list comprehension
209
+ default to using english stopwords
210
+ arguments:
211
+ tokens (list): list of token#s, output of word_tokenize()
212
+ language (str): default to english
213
+ returns:
214
+ a list of tokens without stopwords
215
+ '''
216
+ # define stopwords and store as a set
217
+ stopwords_set = set(stopwords.words(language))
218
+ # check if word is in list of stopwords
219
+ # returns a list of words not found in list of stopwords
220
+ stopwords_removed = [word for word in tokens if word not in stopwords_set]
221
+ # return
222
+ return stopwords_removed
223
+
224
+
225
+
226
+ import itertools
227
+ from typing import List
228
+ import plotly.graph_objects as go
229
+ from plotly.subplots import make_subplots
230
+ def visualize_barchart_titles(topic_model,
231
+ topics: List[int] = None,
232
+ subplot_titles: List[str] = None,
233
+ top_n_topics: int = 8,
234
+ n_words: int = 5,
235
+ width: int = 250,
236
+ height: int = 250) -> go.Figure:
237
+ """ Visualize a barchart of selected topics
238
+
239
+ Arguments:
240
+ topic_model: A fitted BERTopic instance.
241
+ topics: A selection of topics to visualize.
242
+ top_n_topics: Only select the top n most frequent topics.
243
+ n_words: Number of words to show in a topic
244
+ width: The width of each figure.
245
+ height: The height of each figure.
246
+
247
+ Returns:
248
+ fig: A plotly figure
249
+
250
+ Usage:
251
+
252
+ To visualize the barchart of selected topics
253
+ simply run:
254
+
255
+ ```python
256
+ topic_model.visualize_barchart()
257
+ ```
258
+
259
+ Or if you want to save the resulting figure:
260
+
261
+ ```python
262
+ fig = topic_model.visualize_barchart()
263
+ fig.write_html("path/to/file.html")
264
+ ```
265
+ <iframe src="../../getting_started/visualization/bar_chart.html"
266
+ style="width:1100px; height: 660px; border: 0px;""></iframe>
267
+ """
268
+ colors = itertools.cycle(["#D55E00", "#0072B2", "#CC79A7", "#E69F00", "#56B4E9", "#009E73", "#F0E442"])
269
+
270
+ # Select topics based on top_n and topics args
271
+ freq_df = topic_model.get_topic_freq()
272
+ freq_df = freq_df.loc[freq_df.Topic != -1, :]
273
+ if topics is not None:
274
+ topics = list(topics)
275
+ elif top_n_topics is not None:
276
+ topics = sorted(freq_df.Topic.to_list()[:top_n_topics])
277
+ else:
278
+ topics = sorted(freq_df.Topic.to_list()[0:6])
279
+
280
+ # Initialize figure
281
+ if subplot_titles is None:
282
+ subplot_titles = [f"Topic {topic}" for topic in topics]
283
+ else:
284
+ subplot_titles = subplot_titles
285
+ columns = 4
286
+ rows = int(np.ceil(len(topics) / columns))
287
+ fig = make_subplots(rows=rows,
288
+ cols=columns,
289
+ shared_xaxes=False,
290
+ horizontal_spacing=.1,
291
+ vertical_spacing=.4 / rows if rows > 1 else 0,
292
+ subplot_titles=subplot_titles)
293
+
294
+ # Add barchart for each topic
295
+ row = 1
296
+ column = 1
297
+ for topic in topics:
298
+ words = [word + " " for word, _ in topic_model.get_topic(topic)][:n_words][::-1]
299
+ scores = [score for _, score in topic_model.get_topic(topic)][:n_words][::-1]
300
+
301
+ fig.add_trace(
302
+ go.Bar(x=scores,
303
+ y=words,
304
+ orientation='h',
305
+ marker_color=next(colors)),
306
+ row=row, col=column)
307
+
308
+ if column == columns:
309
+ column = 1
310
+ row += 1
311
+ else:
312
+ column += 1
313
+
314
+ # Stylize graph
315
+ fig.update_layout(
316
+ template="plotly_white",
317
+ showlegend=False,
318
+ title={
319
+ 'text': "<b>Topic Word Scores",
320
+ 'x': .5,
321
+ 'xanchor': 'center',
322
+ 'yanchor': 'top',
323
+ 'font': dict(
324
+ size=22,
325
+ color="Black")
326
+ },
327
+ width=width*4,
328
+ height=height*rows if rows > 1 else height * 1.3,
329
+ hoverlabel=dict(
330
+ bgcolor="white",
331
+ font_size=16,
332
+ font_family="Rockwell"
333
+ ),
334
+ )
335
+
336
+ fig.update_xaxes(showgrid=True)
337
+ fig.update_yaxes(showgrid=True)
338
+
339
+ return fig
340
+
341
+
342
+
343
+ # convert transformer model zero shot classification prediction into dataframe
344
+ def convert_zero_shot_classification_output_to_dataframe(model_output):
345
+ '''
346
+ convert zero shot classification output to dataframe
347
+ model's prediction is a list dictionaries
348
+ e.g. each prediction consists of the sequence being predicted, the user defined labels,
349
+ and the respective scores.
350
+ [
351
+ {'sequence': 'the organisation is generally...',
352
+ 'labels': ['rewards', 'resourcing', 'leadership'],
353
+ 'scores': [0.905086100101471, 0.06712279468774796, 0.027791114524006844]},
354
+ ...
355
+ ]
356
+ the function pairs the label and scores and stores it as a dataframe
357
+ it also identifies the label with the highest score
358
+
359
+ arguments:
360
+ model_output (list): output from transformer.pipeline(task='zero-shot-classification')
361
+
362
+ returns:
363
+ a dataframe of label and scores for each prediction
364
+
365
+ '''
366
+
367
+ # store results as dataframe
368
+ results = pd.DataFrame(model_output)
369
+ # zip labels and scores as dictionary
370
+ results['labels_scores'] = results.apply(lambda x: dict(zip(x['labels'], x['scores'])), axis=1)
371
+ # convert labels_scores to dataframe
372
+ labels_scores = pd.json_normalize(results['labels_scores'])
373
+ # get label of maximum score as new column
374
+ labels_scores['label'] = labels_scores.idxmax(axis=1)
375
+ # get score of maximum score as new column
376
+ labels_scores['score'] = labels_scores.max(axis=1)
377
+ # concat labels_scores to results
378
+ results = pd.concat([results, labels_scores], axis=1)
379
+ # drop unused columns
380
+ results = results.drop(['labels', 'scores'], axis=1)
381
+
382
+ # return
383
+ return results
survey_analytics_streamlit.py ADDED
@@ -0,0 +1,333 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # launch app
2
+ # streamlit run "survey_analytics_streamlit.py"
3
+
4
+ # imports
5
+ import streamlit as st
6
+ import pandas as pd
7
+ import numpy as np
8
+ import os
9
+ import matplotlib.pyplot as plt
10
+ import seaborn as sns
11
+ import plotly.express as px
12
+
13
+ # factor analysis
14
+ from factor_analyzer import FactorAnalyzer
15
+ from factor_analyzer.factor_analyzer import calculate_bartlett_sphericity
16
+ from factor_analyzer.factor_analyzer import calculate_kmo
17
+ from scipy.stats import zscore
18
+
19
+ # nlp
20
+ from bertopic import BERTopic
21
+
22
+ # custom
23
+ import survey_analytics_library as LIB
24
+
25
+ st.set_page_config(layout='wide')
26
+
27
+ # define data file path
28
+ data_path = 'data' + os.sep
29
+ # define model file path
30
+ model_path = 'models' + os.sep
31
+
32
+ # load all data and models
33
+ @st.cache
34
+ def read_survey_data():
35
+ data_survey = pd.read_csv(data_path+'bfi_sample_answers.csv')
36
+ data_questions = pd.read_csv(data_path+'bfi_sample_questions.csv')
37
+ return data_survey, data_questions
38
+ data_survey, data_questions = read_survey_data()
39
+
40
+ @st.cache
41
+ def read_tweet_data():
42
+ tokyo = pd.read_csv(data_path+'tokyo_olympics_tweets.csv')
43
+ return tokyo
44
+ tokyo = read_tweet_data()
45
+
46
+ @st.cache(allow_output_mutation=True)
47
+ def load_bertopic_model_unclean():
48
+ topic_model = BERTopic.load(model_path+'bertopic_model_tokyo_olympics_tweets_unclean')
49
+ return topic_model
50
+ topic_model_unclean = load_bertopic_model_unclean()
51
+
52
+ @st.cache(allow_output_mutation=True)
53
+ def load_bertopic_model():
54
+ topic_model = BERTopic.load(model_path+'bertopic_model_tokyo_olympics_tweets')
55
+ return topic_model
56
+ topic_model = load_bertopic_model()
57
+
58
+ @st.cache
59
+ def read_topic_results():
60
+ topic_results = pd.read_csv(data_path+'topic_results.csv')
61
+ return topic_results
62
+ topic_results = read_topic_results()
63
+
64
+ # write title of app
65
+ st.title('DACoP - Survey Analytics')
66
+ st.markdown('''---''')
67
+
68
+
69
+
70
+ st.header('Clustering Survey Responders')
71
+ st.write('''
72
+ Having knowledge about different groups of responders can help us to customise our interactions with them.
73
+ E.g. Within the Financial Institutions we have banks, insurers, and payment services.
74
+ We want to be able to cluster survey reponders into various groups based on how their answers.
75
+ This can be achieved though **Factor Analysis**.
76
+ ''')
77
+ st.write('\n')
78
+ st.write('\n')
79
+
80
+ # copy daya
81
+ df_factor_analysis = data_survey.copy()
82
+
83
+ st.subheader('Sample Survey Data')
84
+ st.write('''
85
+ Here we have a sample survey dataset where responders answer questions about their personality traits on a scale from 1 (Very Inaccurate) to 6 (Very Accurate).
86
+ Factor Analysis gives us \'factors\' or groups of responders into groups can provide us insights about the different personalities of the responders.
87
+ ''')
88
+
89
+ # split page into two columns
90
+ # display survey questions and responses as dataframes
91
+ col1, col2 = st.columns(2)
92
+ with col1:
93
+ st.write('Survey Questions')
94
+ st.dataframe(data_questions)
95
+ with col2:
96
+ st.write('Survey Answers')
97
+ st.dataframe(df_factor_analysis)
98
+ st.write('\n')
99
+ st.write('\n')
100
+
101
+ st.subheader('Factor Analysis Suitability')
102
+ st.write('''
103
+ Before performing Factor Analysis on the data, we need to evaluate if it is suitable to do so.
104
+ We apply two statistical tests (Bartlett's and KMO test) the data.
105
+ ''')
106
+
107
+ # interactive button to run statistical test to determine suitability for factor analysis
108
+ if st.button('Run Tests'):
109
+ # Test with the null hypothesis that the correlation matrix is an identity matrix
110
+ bartlett_sphericity_stat, p_value = calculate_bartlett_sphericity(x=df_factor_analysis)
111
+ # Test how predictable of a variable by others
112
+ kmo_per_variable, kmo_total = calculate_kmo(x=df_factor_analysis)
113
+ st.write(f'''
114
+ The P Value from Bartlett\'s Test (suitability is less than 0.05): **{round(p_value, 2)}**
115
+ The Value from KMO Test (suitability is more than 0.60): **{round(kmo_total, 2)}**
116
+ ''')
117
+ fa_stat_test = 'Failed'
118
+
119
+ if p_value < 0.05 and kmo_total >= 0.6:
120
+ fa_stat_test = 'Passed'
121
+
122
+ st.success(f'Our data has **{fa_stat_test}** the two statistical tests!')
123
+
124
+ st.write('\n')
125
+ st.write('\n')
126
+
127
+ # define factor analyser model
128
+ fa = FactorAnalyzer()
129
+ # fit data
130
+ fa.fit(X=df_factor_analysis)
131
+
132
+ # get eigenvalues
133
+ eigenvalues, _ = fa.get_eigenvalues()
134
+ # get number of eigenvalues more than or equal to 1
135
+ optimal_factors = len([value for value in eigenvalues if value >= 1])
136
+ # store eigenvalues and number of clusters into a df for plotly
137
+ scree_df = pd.DataFrame({'Eigenvalues':eigenvalues, 'Number of Factors':list(range(1, len(eigenvalues)+1))})
138
+
139
+ st.subheader('Number of Clusters?')
140
+ st.write(f'''
141
+ How many clusters or factors are appropriate for our data?
142
+ For Factor Analysis, we can determine the number of factors using the Kaiser criterion and a Scree Plot.
143
+ We should include factors with an Eigenvalue of at least 1.0.
144
+ ''')
145
+
146
+ # plot scree plot
147
+ fig = px.line(
148
+ scree_df,
149
+ x='Number of Factors',
150
+ y='Eigenvalues',
151
+ markers=True,
152
+ title='Scree Plot for Kaiser Criterion',
153
+ template='simple_white',
154
+ width=800,
155
+ height=500,
156
+ )
157
+ fig.add_hline(y=1, line_width=3, line_color='darkgreen')
158
+ st.plotly_chart(fig, use_container_width=True)
159
+ st.write(f'''
160
+ Kaiser criterion is one of many guides to determine the number of factors, ultimately the decision on the number of factors to use is best decided by the user based on their use case.
161
+ ''')
162
+
163
+ with st.form('num_factor_form'):
164
+ user_num_factors = st.number_input('Enter desired number of factors:', min_value=1, max_value=10, value=6)
165
+ optimal_factors = user_num_factors
166
+ submit = st.form_submit_button('Run Factor Analysis')
167
+
168
+ st.write('\n')
169
+ st.write('\n')
170
+
171
+ # define factor analyser model
172
+ fa = FactorAnalyzer(n_factors=optimal_factors, rotation='varimax')
173
+ # fit data
174
+ fa.fit(df_factor_analysis)
175
+ # generate factor loadings
176
+ loads_df = pd.DataFrame(fa.loadings_, index=df_factor_analysis.columns)
177
+
178
+ transformed_df = fa.fit_transform(df_factor_analysis)
179
+ transformed_df = pd.DataFrame(transformed_df)
180
+ transformed_df.columns = ['factor_'+str(col) for col in list(transformed_df)]
181
+
182
+ responder_factors = transformed_df.copy()
183
+ responder_factors['cluster'] = responder_factors.apply(lambda s: s.argmax(), axis=1)
184
+
185
+ # list of factor columns
186
+ list_of_factor_cols = [col for col in responder_factors.columns if 'factor_' in col]
187
+ st.subheader('Fator Analysis Results')
188
+ st.write('''
189
+ Factor analysis gives us a loading for every factor for each responder.
190
+ We assign each responder to a factor or cluster based on their maximum loading across all the factors.
191
+ ''')
192
+ # highlight factor with max loadings
193
+ st.dataframe(responder_factors.style.highlight_max(axis=1, subset=list_of_factor_cols, props='color:white; background-color:green;').format(precision=2))
194
+ st.write('\n')
195
+
196
+ fa_clusters = df_factor_analysis.copy().reset_index(drop=True)
197
+ fa_clusters['cluster'] = responder_factors['cluster']
198
+ fa_z_scores = df_factor_analysis.copy().reset_index(drop=True)
199
+ fa_z_scores = fa_z_scores.apply(zscore)
200
+ fa_z_scores['cluster'] = responder_factors['cluster']
201
+ fa_z_scores = fa_z_scores.groupby('cluster').mean().reset_index()
202
+ fa_z_scores = fa_z_scores.apply(lambda x: round(x, 2))
203
+
204
+ cm = sns.light_palette('green', as_cmap=True)
205
+ list_of_question_cols = list(fa_z_scores.iloc[:,1:])
206
+ st.write('''
207
+ Aggregating the scores of the clusters gives us detail insights to the personality traits of the responders.
208
+ The scores here have been normalised to Z-scores, a measure of how many standard deviations (SD) is the score away from the mean.
209
+ E.g. A Z-score of 0 indicates the score is identical to the mean, while a Z-score of 1 indicates the score is 1 SD away from the mean.
210
+ ''')
211
+ st.dataframe(fa_z_scores.style.background_gradient(cmap=cm, subset=list_of_question_cols).format(precision=2))
212
+ st.write('\n')
213
+
214
+ cluster_counts = fa_clusters['cluster'].value_counts().reset_index()
215
+ cluster_counts = cluster_counts.rename(columns={'index':'Cluster', 'cluster':'Count'})
216
+
217
+ st.write('''
218
+ Lastly, we can visualise the distribution of responders in each cluster.
219
+ ''')
220
+ fig = px.pie(
221
+ cluster_counts,
222
+ values='Count',
223
+ names='Cluster',
224
+ hole=0.35,
225
+ title='Percentage of Responders in Each Cluster',
226
+ template='simple_white',
227
+ width=1000,
228
+ height=600,
229
+ )
230
+ st.plotly_chart(fig, use_container_width=True)
231
+ st.markdown('''---''')
232
+
233
+
234
+
235
+
236
+
237
+
238
+ st.header('Uncovering Topics from Text Responses')
239
+ st.write('''
240
+ With feedback forms or open-ended survey questions, we want to know what are the responders generally talking about.
241
+ One way would be to manually read all the collected response to get a sense of the topics within, however, this is very manual and subjective.
242
+ Using **Topic Modelling**, we can programmatically extract common topics with the help of machine learning.
243
+ ''')
244
+ st.write('\n')
245
+
246
+ st.write('''
247
+ Here we have 10,000 tweets from the Tokyo Olympics, going through them manually and coming up with topics would not be practical.
248
+ ''')
249
+ st.dataframe(tokyo)
250
+ st.write('\n')
251
+ st.write('\n')
252
+
253
+ st.write('''
254
+ Lets generate some topics without performing any cleaning to the data.
255
+ ''')
256
+ st.write('\n')
257
+
258
+ fig = LIB.visualize_barchart_titles(
259
+ topic_model=topic_model_unclean,
260
+ subplot_titles=None,
261
+ n_words=5,
262
+ top_n_topics=8,
263
+ height=300
264
+ )
265
+ st.plotly_chart(fig, use_container_width=True)
266
+
267
+ st.write('''
268
+ From the chart above, we can see that 'Topic 1' and 'Topic 3' have some words that are not as meaningful.
269
+ For 'Topic 1', we already know that the tweets are about the Tokyo 2020 Olympics, having a topic for that isn't helpful.
270
+ 'Tokyo', '2020', etc., we refer to these as *stopwords*, and lets remove them and regenerate the topics.
271
+ ''')
272
+ st.write('\n')
273
+
274
+ labelled_topics = [
275
+ 'Mirabai Chanu (Indian Weightlifter)',
276
+ 'Hockey',
277
+ 'Barbra Banda (Zambian Football Player)',
278
+ 'Sutirtha Mukherjee (Indian Table Tennis Player)',
279
+ 'Vikas Krishan (Indian Boxer)',
280
+ 'Road Race',
281
+ 'Brendon Smith (Australian Swimmer)',
282
+ 'Sam Kerr (Australian Footballer)',
283
+ ]
284
+
285
+ fig = LIB.visualize_barchart_titles(
286
+ topic_model=topic_model,
287
+ subplot_titles=labelled_topics,
288
+ n_words=5,
289
+ top_n_topics=8,
290
+ height=300
291
+ )
292
+ st.plotly_chart(fig, use_container_width=True)
293
+ st.write('''
294
+ Now we can see that the topics have improved.
295
+ We can make use of the top words in each topic to come up with a meaningful name.
296
+ ''')
297
+ st.write('\n')
298
+ st.write('\n')
299
+
300
+ topics_df = topic_model.get_topic_info()
301
+
302
+ st.write(f'''
303
+ Next, we can also review the total number of topics and how many tweets are in each topic, to give us a sense of importance or priority.
304
+ There are a total of **{len(topics_df)-1}** topics, and the larget topic contains **{topics_df['Count'][1]}** tweets.
305
+ {topics_df['Count'][0]} tweets have also been assigned as Topic -1 or outliers.
306
+ These tweets are more unique and there are enough of them to form a topic.
307
+ ''')
308
+ st.dataframe(topics_df)
309
+ st.write('\n')
310
+
311
+ st.write('''
312
+ As there are many topics generated, we can also visualise how closely related they are to one another.
313
+ Depending on the business case, we may want to merge these topics together or keep them separate.
314
+ If there are too many or too few topics, there is also the option to tune the parameters of the model to refine the results.
315
+ ''')
316
+ fig = topic_model.visualize_topics()
317
+ st.plotly_chart(fig, use_container_width=True)
318
+ st.write('\n')
319
+
320
+ st.write('''
321
+ Lastly, we can inspect the individual tweets within each topic.
322
+ ''')
323
+
324
+ with st.form('inspect_tweets'):
325
+ inspect_topic = st.number_input('Enter Topic (from -1 to 63) to Inspect:', min_value=-1, max_value=63, value=8)
326
+ submit = st.form_submit_button('Inspect Topic')
327
+
328
+ inspect_topic_words = [i[0] for i in topic_model.get_topic(inspect_topic)[:5]]
329
+
330
+ st.write(f'''
331
+ The top five words for Topic {inspect_topic} are: {inspect_topic_words}
332
+ ''')
333
+ st.dataframe(topic_results.loc[(topic_results['Topic'] == inspect_topic)])