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fuxialexander
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•
598ad97
1
Parent(s):
8dbf540
update proscope plot
Browse files- app/main.py +5 -13
app/main.py
CHANGED
@@ -112,14 +112,12 @@ def visualize_AF2(tf_pair, a):
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a = GETAFPairseg(strcture_dir, fasta_dir, GET_CONFIG)
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# segpair.choices = list(a.pairs_data.keys())
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fig1
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fig2
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fig3 = a.protein1.plotly_plddt()
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fig4 = a.protein2.plotly_plddt()
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fig5, ax5 = a.plot_score_heatmap()
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plt.tight_layout()
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new_dropdown = update_dropdown(list(a.pairs_data.keys()), "Segment pair")
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return fig1, fig2,
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def view_pdb(seg_pair, a):
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@@ -322,12 +320,8 @@ You can download specific segment pair PDB files by clicking 'Get PDB.'
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pdb_download = gr.Markdown(label="Download PDB")
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with gr.Row() as row:
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interact_plddt1 = gr.Plot(label="Interact pLDDT 1")
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with gr.Column():
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protein2_plddt = gr.Plot(label="Protein 2 pLDDT")
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interact_plddt2 = gr.Plot(label="Interact pLDDT 2")
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tf_pairs_btn.click(
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visualize_AF2,
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@@ -335,8 +329,6 @@ You can download specific segment pair PDB files by clicking 'Get PDB.'
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outputs=[
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interact_plddt1,
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interact_plddt2,
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protein1_plddt,
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protein2_plddt,
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heatmap,
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segpair,
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af,
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a = GETAFPairseg(strcture_dir, fasta_dir, GET_CONFIG)
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# segpair.choices = list(a.pairs_data.keys())
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+
fig1 = a.plotly_plddt_gene1()
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fig2 = a.plotly_plddt_gene2()
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fig5, ax5 = a.plot_score_heatmap()
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plt.tight_layout()
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new_dropdown = update_dropdown(list(a.pairs_data.keys()), "Segment pair")
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+
return fig1, fig2, fig5, new_dropdown, a
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def view_pdb(seg_pair, a):
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pdb_download = gr.Markdown(label="Download PDB")
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with gr.Row() as row:
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interact_plddt1 = gr.Plot(label="Interact pLDDT 1")
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interact_plddt2 = gr.Plot(label="Interact pLDDT 2")
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tf_pairs_btn.click(
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visualize_AF2,
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outputs=[
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interact_plddt1,
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interact_plddt2,
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heatmap,
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segpair,
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af,
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